Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_I08
         (534 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75712-12|CAB00049.1|  250|Caenorhabditis elegans Hypothetical p...    55   4e-08
Z75533-12|CAA99824.1|  250|Caenorhabditis elegans Hypothetical p...    55   4e-08
AF068717-3|AAC17762.2|  361|Caenorhabditis elegans Serpentine re...    28   4.8  
Z95559-10|CAB63364.2|  327|Caenorhabditis elegans Hypothetical p...    27   6.4  
U28733-1|AAA68302.2|  982|Caenorhabditis elegans Patched related...    27   8.5  

>Z75712-12|CAB00049.1|  250|Caenorhabditis elegans Hypothetical
           protein K04G2.1 protein.
          Length = 250

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 24/30 (80%), Positives = 26/30 (86%)
 Frame = -1

Query: 534 LQCETCGSRCSVASIKSGFQAVTGKRAAIR 445
           LQC  CGSRCSV +IKSGF+AV GKRAAIR
Sbjct: 212 LQCTNCGSRCSVTAIKSGFKAVVGKRAAIR 241


>Z75533-12|CAA99824.1|  250|Caenorhabditis elegans Hypothetical
           protein K04G2.1 protein.
          Length = 250

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 24/30 (80%), Positives = 26/30 (86%)
 Frame = -1

Query: 534 LQCETCGSRCSVASIKSGFQAVTGKRAAIR 445
           LQC  CGSRCSV +IKSGF+AV GKRAAIR
Sbjct: 212 LQCTNCGSRCSVTAIKSGFKAVVGKRAAIR 241


>AF068717-3|AAC17762.2|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein142 protein.
          Length = 361

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 262 NNKMLDNYVKIYNDLQINIINCFKFTTHTIFI 357
           NN+++  YV + N +  NII CF F   T  +
Sbjct: 212 NNEVILKYVTLVNAMVSNIIPCFLFPVVTFLL 243


>Z95559-10|CAB63364.2|  327|Caenorhabditis elegans Hypothetical
           protein Y41E3.15 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 325 CFKFTTHTIFI*NDVNKYCMYPRFLIVPLTLDTNTLCSLC 444
           C  F + ++FI   V  +C YP F+ +  T+   T C+ C
Sbjct: 85  CSCFISGSLFIQGAV--FCSYPSFIYITGTIVLTTWCTSC 122


>U28733-1|AAA68302.2|  982|Caenorhabditis elegans Patched related
           family protein 6 protein.
          Length = 982

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 69  TIYINISFRMGYIQIILHNFISNTCNLS 152
           TI ++I F + +   I H F+SN  NLS
Sbjct: 849 TIIMSIGFSIEFSAHITHGFVSNDSNLS 876


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,894,429
Number of Sequences: 27780
Number of extensions: 198288
Number of successful extensions: 424
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)