Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_I08
         (534 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    24   0.85 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   1.5  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   2.0  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   2.0  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   2.0  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   3.4  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   3.4  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    21   6.0  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   7.9  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    21   7.9  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 44  VSMRIIQVNYIYKYKF*NGVHSDNITQLY 130
           +S R I  N  YKY + N  +++N  +LY
Sbjct: 85  LSNRTIHNNNNYKYNYNNNNYNNNCKKLY 113


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 13/44 (29%), Positives = 28/44 (63%)
 Frame = -2

Query: 497 PASNLVSKQLPGNVLLSVQRLHRVLVSSVNGTIKNLGYIQYLLT 366
           PA++L++ +   N +++ Q L+++  SSV    KN G ++Y ++
Sbjct: 406 PANDLLTTEKDNNEIVTAQFLNQLKKSSVLVHTKN-GRLKYQIS 448


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 44  VSMRIIQVNYIYKYKF*NGVHSDNITQLY 130
           +S + I  N  YKY + N  +++N  +LY
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNNNCKKLY 113


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 44  VSMRIIQVNYIYKYKF*NGVHSDNITQLY 130
           +S + I  N  YKY + N  +++N  +LY
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNNNCKKLY 113


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 44  VSMRIIQVNYIYKYKF*NGVHSDNITQLY 130
           +S + I  N  YKY + N  +++N  +LY
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNNNCKKLY 113


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 262 NNKMLDNYVKIYNDLQINI 318
           NN   +NY K+Y +  INI
Sbjct: 106 NNNYNNNYKKLYKNYIINI 124


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 262 NNKMLDNYVKIYNDLQINI 318
           NN   +NY K+Y +  INI
Sbjct: 106 NNNYNNNYKKLYKNYIINI 124


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 262 NNKMLDNYVKIYNDLQINIIN 324
           NN   +NY   Y  L  NIIN
Sbjct: 320 NNYNYNNYNNNYKPLYYNIIN 340


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -1

Query: 534 LQCETCGSRCSVASIKSGFQAVTGK 460
           L C T    C  A IK      TGK
Sbjct: 361 LDCHTAHIACKFAEIKEKCDRRTGK 385


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -1

Query: 534 LQCETCGSRCSVASIKSGFQAVTGK 460
           L C T    C  A IK      TGK
Sbjct: 72  LDCHTAHIACKFAEIKEKCDRRTGK 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,113
Number of Sequences: 438
Number of extensions: 2938
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)