Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_I06
         (301 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...    57   6e-10
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb...    24   4.2  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    23   7.3  
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    23   9.6  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 56.8 bits (131), Expect = 6e-10
 Identities = 25/43 (58%), Positives = 33/43 (76%)
 Frame = +3

Query: 147 ERTLLMVKPDGVQRGLVGTIIERFEKQGFKLVGLKFVWPSEDV 275
           E+T + VKPD VQRGL+G II +FE +G+KL  LKF+ PS D+
Sbjct: 4   EQTFIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDL 46


>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 204 IIERFEKQGFKLVGLKFVWPSEDVAAATLQ 293
           + +RF+  GFK++ ++ +   EDV  A +Q
Sbjct: 154 LYDRFKNCGFKILFIESLCNKEDVINANIQ 183


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 20  IKCGILISLYFISIKLN 70
           + CG+ ++ YF SIK N
Sbjct: 124 LACGLYVTSYFFSIKNN 140


>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 200 HDHRTFRKTRFQISWIKIRLALGRRCCSNITVT 298
           HD +TF  T   I   K+R  L R C  +  +T
Sbjct: 124 HDPKTFENTSLCILGEKVRTQLLRFCPESFYLT 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,107,214
Number of Sequences: 5004
Number of extensions: 17676
Number of successful extensions: 27
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)