Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_I06
         (301 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical p...    55   8e-09
Z93388-11|CAB07660.2|  319|Caenorhabditis elegans Hypothetical p...    27   2.5  
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr...    26   4.4  
U80448-6|AAO12417.1|  687|Caenorhabditis elegans Hypothetical pr...    26   5.8  
U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical pr...    26   5.8  

>Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical
           protein F25H2.5 protein.
          Length = 153

 Score = 55.2 bits (127), Expect = 8e-09
 Identities = 24/35 (68%), Positives = 29/35 (82%)
 Frame = +3

Query: 147 ERTLLMVKPDGVQRGLVGTIIERFEKQGFKLVGLK 251
           ERT + +KPDGV RGLVG II RFE++G+KLV LK
Sbjct: 5   ERTFIAIKPDGVHRGLVGKIIARFEERGYKLVALK 39


>Z93388-11|CAB07660.2|  319|Caenorhabditis elegans Hypothetical
           protein T10C6.3 protein.
          Length = 319

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 8   GHWTIKCGILISLYFISIK 64
           G  ++KCG L+SLY ISI+
Sbjct: 175 GSVSVKCGTLLSLYSISIQ 193


>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical
           protein F36H2.3 protein.
          Length = 1388

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -1

Query: 301 LSHCNVAAATSSEGQTNFNPT--NLKPCFSKRSMIVPTRPR*TPSGLT 164
           L  CN  ++T   G T  NPT  N +  +S+ +    TRP  T + LT
Sbjct: 828 LGTCNFGSSTGGTGTTCPNPTVVNGQITYSQGNTFDATRPALTTATLT 875


>U80448-6|AAO12417.1|  687|Caenorhabditis elegans Hypothetical
           protein F59A3.2b protein.
          Length = 687

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -1

Query: 271 SSEGQTNFNPTNLKP 227
           SS GQ  FNPTNL P
Sbjct: 561 SSPGQALFNPTNLYP 575


>U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical
           protein F59A3.2a protein.
          Length = 975

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -1

Query: 271 SSEGQTNFNPTNLKP 227
           SS GQ  FNPTNL P
Sbjct: 561 SSPGQALFNPTNLYP 575


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,156,504
Number of Sequences: 27780
Number of extensions: 99773
Number of successful extensions: 165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)