Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_I03
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...   226   2e-60
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...   177   7e-46
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    44   2e-05
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    28   0.89 
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    27   2.1  
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    27   2.1  

>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 778

 Score =  226 bits (552), Expect = 2e-60
 Identities = 106/165 (64%), Positives = 126/165 (76%), Gaps = 1/165 (0%)
 Frame = +3

Query: 3    TRHISAAGPWLKYRGHLDNISNNMFITATNAENGELNKVRNQLTGEFGPVPGTARAYKAA 182
            T HISAAGPWLKYRGHL NISNN  I A NAENGE NK+++QLTGE+  VP  A  Y+  
Sbjct: 589  TDHISAAGPWLKYRGHLQNISNNYMIGAINAENGEANKLKDQLTGEYKTVPNVAIDYRDH 648

Query: 183  GVRWCVVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGVLPLTFANAA 362
            G+RW  +G++N+GEGSSREHAALEPR+LGG A+I KSFARIHETNLKKQG+LPLTFA+ A
Sbjct: 649  GIRWVTLGEQNFGEGSSREHAALEPRYLGGAAVITKSFARIHETNLKKQGLLPLTFADPA 708

Query: 363  DYDKIQPSDKISLLGLKDLAPGKQVDCQIKHKDGSVE-TIKLNHS 494
             YDKI P D + + GL   APGK +   +   DGS E + KLNH+
Sbjct: 709  AYDKISPFDTVDIDGLTTFAPGKPLTLVVHPADGSAEWSTKLNHT 753


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 905

 Score =  177 bits (431), Expect = 7e-46
 Identities = 89/167 (53%), Positives = 109/167 (65%), Gaps = 3/167 (1%)
 Frame = +3

Query: 3    TRHISAAGPWLKYRGHLDNISNNMFITATNAENGELNKVRNQLTGEFGPVPGTARAYKAA 182
            T HISAAG WLKY+GHL NI NN  I A NA  GE+N+  +   G+   +P     +K  
Sbjct: 600  TDHISAAGKWLKYKGHLSNICNNTLIGAMNAATGEVNRAYDN--GKGMTIPELMWKWKKD 657

Query: 183  GVRWCVVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGVLPLTFANAA 362
            G  W VV + NYGEGS+REHAAL+PR + GR I+ KSFARIHETNLKKQGVLPLTF N A
Sbjct: 658  GQPWLVVAEHNYGEGSAREHAALQPRAMNGRIILTKSFARIHETNLKKQGVLPLTFVNEA 717

Query: 363  DYDKIQPSDKISLLGLKDLAPG---KQVDCQIKHKDGSVETIKLNHS 494
            DY+KI   DK+S  G++ L  G   + +   +  KDGSV  I   H+
Sbjct: 718  DYEKIDAEDKVSTRGIEQLLEGVLDQPITLVVTKKDGSVVEIPCKHT 764


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 23/49 (46%), Positives = 28/49 (57%)
 Frame = +3

Query: 198 VVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGVLPL 344
           +V  +N+G GSSREHA       G R II  SFA I   N  K G+LP+
Sbjct: 607 LVAHDNFGCGSSREHAPWALNDFGIRVIIAPSFADIFFNNCFKNGMLPI 655


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 27.9 bits (59), Expect = 0.89
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 222 EGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGVL 338
           +G+   +A   P HLG  +  V++ A+IHE  LK   VL
Sbjct: 794 KGNLVANAPHMPVHLGSMSTCVRTQAKIHEGKLKPGDVL 832


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = +3

Query: 36  KYRGHLDNISNNMFITATNAENGELNKVRN---QLTGEFGPVPGT 161
           K+RGH+  I         N  N EL K  N   Q+  EFG +  T
Sbjct: 382 KWRGHVVLIQITSLPVGNNYSNEELKKTENLVAQINSEFGSLDYT 426


>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 198 VVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGVLPL 344
           +V   N+G GSSRE AA      G   ++  SF+ I + N     +L +
Sbjct: 594 LVSGFNFGTGSSREQAATAILSRGIPLVVGGSFSDIFKRNSINNALLAI 642


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,677,283
Number of Sequences: 5004
Number of extensions: 29026
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)