Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_I03
(494 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0606 - 5321751-5321819,5321950-5322192,5322279-5322377,532... 67 8e-12
03_01_0261 - 2007522-2007590,2007684-2007926,2008008-2008106,200... 62 3e-10
02_05_0174 - 26486955-26487728 45 3e-05
11_01_0551 + 4361640-4363386,4363443-4363687 30 1.2
04_04_1465 + 33794225-33794389,33794471-33794597,33794669-337947... 29 1.6
02_05_0866 - 32331629-32334328 29 2.1
01_06_1057 - 34142979-34143114,34143212-34143390,34143496-341436... 29 2.1
01_06_0089 + 26314805-26315449,26317228-26317845 28 3.6
07_01_0748 - 5735420-5735593,5735735-5735953,5736353-5736532,573... 28 4.7
09_02_0374 - 8112021-8112820,8112908-8113152,8113256-8113455,811... 27 6.3
12_01_0442 + 3495333-3496484 27 8.3
09_02_0469 - 9610883-9611338,9611749-9611871,9612199-9612375,961... 27 8.3
06_03_0823 - 25026949-25027551,25027635-25027742,25027994-250281... 27 8.3
05_06_0107 + 25617949-25618305,25618559-25618993 27 8.3
>08_01_0606 - 5321751-5321819,5321950-5322192,5322279-5322377,
5322463-5322942,5323069-5323167,5323306-5323427,
5323517-5323635,5323734-5323801,5323889-5324074,
5324169-5324244,5324339-5324418,5324505-5324561,
5324980-5325122,5325208-5325352,5325652-5325813,
5325893-5326078,5326263-5326355,5326437-5326597,
5327005-5327109,5328263-5328278
Length = 902
Score = 66.9 bits (156), Expect = 8e-12
Identities = 40/94 (42%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Frame = +3
Query: 99 NGELN-KVRNQLTGEFGPVPGTARAYKAAGVRWCVVGDENYGEGSSREHAALEPRHLGGR 275
NGE+ K + TGE V A YK+ G V+ YG GSSR+ AA P LG +
Sbjct: 743 NGEVGPKTVHVPTGEKLYVFDAALKYKSEGHDTIVLAGAEYGSGSSRDWAAKGPMLLGVK 802
Query: 276 AIIVKSFARIHETNLKKQGVLPLTFANAADYDKI 377
A+I KSF RIH +NL G++PL F D D +
Sbjct: 803 AVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSL 836
>03_01_0261 - 2007522-2007590,2007684-2007926,2008008-2008106,
2008214-2008693,2008806-2008904,2009097-2009218,
2009296-2009414,2009492-2009559,2009832-2010017,
2010323-2010425,2010477-2010556,2010638-2010694,
2010771-2010913,2010988-2011132,2011501-2011662,
2011759-2011944,2012273-2012365,2012893-2013053,
2013440-2013547,2013664-2013928
Length = 995
Score = 61.7 bits (143), Expect = 3e-10
Identities = 33/82 (40%), Positives = 44/82 (53%)
Frame = +3
Query: 132 TGEFGPVPGTARAYKAAGVRWCVVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHE 311
+GE V A YK G ++ YG GSSR+ AA P G +A+I KSF RIH
Sbjct: 848 SGEKLSVFDAATKYKNEGHDTIILAGAEYGSGSSRDWAAKGPMLQGVKAVIAKSFERIHR 907
Query: 312 TNLKKQGVLPLTFANAADYDKI 377
+NL G++PL F + D D +
Sbjct: 908 SNLAGMGIIPLCFKSGEDADTL 929
>02_05_0174 - 26486955-26487728
Length = 257
Score = 45.2 bits (102), Expect = 3e-05
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +3
Query: 198 VVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQG-VLPLTFANAADYDK 374
++G N+G GSSREHA + G RA++ + +ARI N G V PL A+ + +
Sbjct: 141 IIGGANFGCGSSREHAPVALGAAGARAVVAEGYARIFFRNSVATGEVYPLELADTGAWKE 200
Query: 375 IQPSDKISL 401
+ D +++
Sbjct: 201 CKTGDVVTV 209
>11_01_0551 + 4361640-4363386,4363443-4363687
Length = 663
Score = 29.9 bits (64), Expect = 1.2
Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 3/110 (2%)
Frame = -1
Query: 341 RQNS--LFLQVSLVDSGEGLDDDGASAEVARFERXXXXXXXXXXXXXADDAPAHPGRLIR 168
+QNS + + + D D+D A+ A E+ D+ G +
Sbjct: 70 KQNSANVVAETAAADEAAAADEDDNPAKPAAGEKAAAAAASSKDQTFDDENGRTEGGALV 129
Query: 167 ARGPGHGPELAGQLVP-HFVQFAVLSVRRGDEHIVGDVIEMPPVFEPGSS 21
G G E A + ++ A + ++ EH VGD + P V + SS
Sbjct: 130 KPESGGGDEAASDVKEIGSLEQAAIDMKDTTEHSVGDTTKEPGVVQDKSS 179
>04_04_1465 +
33794225-33794389,33794471-33794597,33794669-33794799,
33795153-33795254,33795337-33795420,33795504-33795731,
33795934-33796038,33796376-33796731,33797146-33797303,
33797399-33797505,33797852-33798061
Length = 590
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 291 SFARIHETNLKKQGVLPLTFANAADYDKIQPSDKISLLGL 410
S +IH ++ + PLTFA D +PS K+ GL
Sbjct: 271 SMGKIHFEKIRMKPGKPLTFAEIVTEDSSKPSKKVLAFGL 310
>02_05_0866 - 32331629-32334328
Length = 899
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 199 THQRTPAALYARAVPGTGPNSPVSWFRTLFSSPFSA 92
T + P L AR + PN V W F+SP +A
Sbjct: 93 TDRAAPLRLTARGISAEDPNGTVVWSTPAFASPVAA 128
>01_06_1057 -
34142979-34143114,34143212-34143390,34143496-34143669,
34143757-34144005,34144108-34144233,34144341-34144565,
34144657-34144747,34144837-34144951,34145312-34145366
Length = 449
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +2
Query: 320 EETRSSAANVRKCRRLR*DSALGQNLTSRSEGSC 421
+++ SA++VRKC R + + L LT+RS+ +C
Sbjct: 132 QQSEGSASSVRKCSRKKVINTLTSVLTARSKVAC 165
>01_06_0089 + 26314805-26315449,26317228-26317845
Length = 420
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 328 CFFRLVSWILAKDLTMMARPPRWRGSS 248
C F LVS +LA LT +A RWR +S
Sbjct: 2 CCFLLVSVLLATTLTDVASAQRWRQTS 28
>07_01_0748 -
5735420-5735593,5735735-5735953,5736353-5736532,
5736602-5736739,5736852-5737052,5737859-5737986,
5738114-5738189,5738354-5738503,5738594-5739115,
5739208-5739357,5739559-5739807,5740249-5740440,
5740890-5740937,5741589-5741717,5741821-5741935,
5742044-5742159,5742341-5742415,5742562-5742696
Length = 998
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +3
Query: 87 TNAENGELNKVRNQLTGEFGP---VPGTARAYKAAG 185
TN ELN V+NQL +F P P + ++A G
Sbjct: 758 TNMLEAELNSVKNQLLSDFSPDDMCPTSTHFFEATG 793
>09_02_0374 -
8112021-8112820,8112908-8113152,8113256-8113455,
8113584-8114235,8114369-8114661
Length = 729
Score = 27.5 bits (58), Expect = 6.3
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 192 WCVVGDENYGEGSS 233
WC G ENYGEG +
Sbjct: 100 WCSFGPENYGEGGT 113
>12_01_0442 + 3495333-3496484
Length = 383
Score = 27.1 bits (57), Expect = 8.3
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Frame = -2
Query: 268 PRWR----GSSAACSREEXXXXXXXPTTHQRTPAALYARAVPGTGPNSPV 131
P+WR G S C+ R PAA A P + P+SP+
Sbjct: 129 PQWRSGPMGRSTLCNACGVRLRAVGSLPEHRAPAARTTTAAPASPPDSPI 178
>09_02_0469 - 9610883-9611338,9611749-9611871,9612199-9612375,
9614416-9614501,9615519-9615678,9616122-9617438,
9619463-9620428,9621452-9621766
Length = 1199
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 203 DDAPAHPGRLIRARGPGHGPE 141
DDAP H GR ++ G G G E
Sbjct: 945 DDAPVHFGRFLKKNGFGGGSE 965
>06_03_0823 -
25026949-25027551,25027635-25027742,25027994-25028107,
25028200-25028309,25028432-25028520,25028637-25028833,
25028961-25029122,25029255-25029373,25029488-25029541,
25029687-25029769,25029894-25029982,25030105-25030257,
25030373-25030465,25032070-25032136,25032238-25032350,
25033466-25033561,25034415-25034594
Length = 809
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -2
Query: 154 GTGP-NSPVSWFRTLFSSPFSAFVAVMNIL 68
GT P N P +W++T F +P V+++L
Sbjct: 597 GTVPINKPFTWYKTTFQAPAGEDTVVVDLL 626
>05_06_0107 + 25617949-25618305,25618559-25618993
Length = 263
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -2
Query: 331 PCF-FRLVSWILAKDLTMMARPPRWRGSSAACSRE 230
PC +R++ W K+L + P W+ + C +E
Sbjct: 68 PCTGYRMIYWNRHKELLQLQLHPMWKAPISCCEQE 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,379,164
Number of Sequences: 37544
Number of extensions: 238185
Number of successful extensions: 843
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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