Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_I03
         (494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25599-9|AAN63393.1|  683|Caenorhabditis elegans Aconitase prote...   272   9e-74
L25599-8|AAL65788.1|  665|Caenorhabditis elegans Aconitase prote...   272   9e-74
L25599-7|AAA28050.2|  777|Caenorhabditis elegans Aconitase prote...   272   9e-74
Z66567-1|CAA91491.1|  887|Caenorhabditis elegans Hypothetical pr...    63   9e-11
Z81073-6|CAN86904.2|  215|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z81073-5|CAE17804.3|  242|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AL110485-33|CAN86916.1|  360|Caenorhabditis elegans Hypothetical...    27   9.9  
AL110485-32|CAB60360.1|  375|Caenorhabditis elegans Hypothetical...    27   9.9  

>L25599-9|AAN63393.1|  683|Caenorhabditis elegans Aconitase protein
           2, isoform c protein.
          Length = 683

 Score =  272 bits (667), Expect = 9e-74
 Identities = 123/164 (75%), Positives = 139/164 (84%)
 Frame = +3

Query: 3   TRHISAAGPWLKYRGHLDNISNNMFITATNAENGELNKVRNQLTGEFGPVPGTARAYKAA 182
           T HISAAGPWLKYRGHLDNISNN+F+TA NA+NGE+NKV+NQ+TGE+G VP TAR YKA 
Sbjct: 494 TDHISAAGPWLKYRGHLDNISNNLFLTAINADNGEMNKVKNQVTGEYGAVPATARKYKAD 553

Query: 183 GVRWCVVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGVLPLTFANAA 362
           GVRW  +GDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQG+LPLTFAN A
Sbjct: 554 GVRWVAIGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLTFANPA 613

Query: 363 DYDKIQPSDKISLLGLKDLAPGKQVDCQIKHKDGSVETIKLNHS 494
           DYDKI PSD +S++GL   APGK +    K  +GS   + LNH+
Sbjct: 614 DYDKIDPSDNVSIVGLSSFAPGKPLTAIFKKTNGSKVEVTLNHT 657


>L25599-8|AAL65788.1|  665|Caenorhabditis elegans Aconitase protein
           2, isoform b protein.
          Length = 665

 Score =  272 bits (667), Expect = 9e-74
 Identities = 123/164 (75%), Positives = 139/164 (84%)
 Frame = +3

Query: 3   TRHISAAGPWLKYRGHLDNISNNMFITATNAENGELNKVRNQLTGEFGPVPGTARAYKAA 182
           T HISAAGPWLKYRGHLDNISNN+F+TA NA+NGE+NKV+NQ+TGE+G VP TAR YKA 
Sbjct: 476 TDHISAAGPWLKYRGHLDNISNNLFLTAINADNGEMNKVKNQVTGEYGAVPATARKYKAD 535

Query: 183 GVRWCVVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGVLPLTFANAA 362
           GVRW  +GDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQG+LPLTFAN A
Sbjct: 536 GVRWVAIGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLTFANPA 595

Query: 363 DYDKIQPSDKISLLGLKDLAPGKQVDCQIKHKDGSVETIKLNHS 494
           DYDKI PSD +S++GL   APGK +    K  +GS   + LNH+
Sbjct: 596 DYDKIDPSDNVSIVGLSSFAPGKPLTAIFKKTNGSKVEVTLNHT 639


>L25599-7|AAA28050.2|  777|Caenorhabditis elegans Aconitase protein 2,
            isoform a protein.
          Length = 777

 Score =  272 bits (667), Expect = 9e-74
 Identities = 123/164 (75%), Positives = 139/164 (84%)
 Frame = +3

Query: 3    TRHISAAGPWLKYRGHLDNISNNMFITATNAENGELNKVRNQLTGEFGPVPGTARAYKAA 182
            T HISAAGPWLKYRGHLDNISNN+F+TA NA+NGE+NKV+NQ+TGE+G VP TAR YKA 
Sbjct: 588  TDHISAAGPWLKYRGHLDNISNNLFLTAINADNGEMNKVKNQVTGEYGAVPATARKYKAD 647

Query: 183  GVRWCVVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGVLPLTFANAA 362
            GVRW  +GDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQG+LPLTFAN A
Sbjct: 648  GVRWVAIGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLTFANPA 707

Query: 363  DYDKIQPSDKISLLGLKDLAPGKQVDCQIKHKDGSVETIKLNHS 494
            DYDKI PSD +S++GL   APGK +    K  +GS   + LNH+
Sbjct: 708  DYDKIDPSDNVSIVGLSSFAPGKPLTAIFKKTNGSKVEVTLNHT 751


>Z66567-1|CAA91491.1|  887|Caenorhabditis elegans Hypothetical protein
            ZK455.1 protein.
          Length = 887

 Score = 63.3 bits (147), Expect = 9e-11
 Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
 Frame = +3

Query: 132  TGEFGPVPGTARAYKAAGVRWCVVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHE 311
            +GE   +   A+ YK AG+   ++  + YG GSSR+ AA  P   G +A+I +SF RIH 
Sbjct: 744  SGEELDIFDAAQKYKDAGIPAIILAGKEYGCGSSRDWAAKGPFLQGVKAVIAESFERIHR 803

Query: 312  TNLKKQGVLPLTFANAADYDKIQPSDKISL-LGL-KDLAPGKQVDCQIKHKDGSV 470
            +NL   G++P  +    + D +  + K    +G+  DL PG+ +D  +   +GSV
Sbjct: 804  SNLIGMGIIPFQYQAGQNADSLGLTGKEQFSIGVPDDLKPGQLIDVNV--SNGSV 856


>Z81073-6|CAN86904.2|  215|Caenorhabditis elegans Hypothetical
           protein F30F8.10b protein.
          Length = 215

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 276 AIIVKSFARIHETNLKKQGVLPLTFANAADYDKIQPSDKISLLGL 410
           A++V     +++ NL+ QG+LP + A+ A    I    K   LGL
Sbjct: 70  AMVVSETKFLYDCNLEDQGILPSSNAHVAYILSIAVDKKFRRLGL 114


>Z81073-5|CAE17804.3|  242|Caenorhabditis elegans Hypothetical
           protein F30F8.10a protein.
          Length = 242

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 276 AIIVKSFARIHETNLKKQGVLPLTFANAADYDKIQPSDKISLLGL 410
           A++V     +++ NL+ QG+LP + A+ A    I    K   LGL
Sbjct: 97  AMVVSETKFLYDCNLEDQGILPSSNAHVAYILSIAVDKKFRRLGL 141


>AL110485-33|CAN86916.1|  360|Caenorhabditis elegans Hypothetical
           protein Y46G5A.18b protein.
          Length = 360

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 321 KKQGVLPLTFANAADYDKIQPSDKISLLGLK 413
           KK G     ++ AA +D+I P  +++LLG K
Sbjct: 187 KKAGKRFSPYSGAACFDRIDPKSRMALLGKK 217


>AL110485-32|CAB60360.1|  375|Caenorhabditis elegans Hypothetical
           protein Y46G5A.18a protein.
          Length = 375

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 321 KKQGVLPLTFANAADYDKIQPSDKISLLGLK 413
           KK G     ++ AA +D+I P  +++LLG K
Sbjct: 187 KKAGKRFSPYSGAACFDRIDPKSRMALLGKK 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,708,896
Number of Sequences: 27780
Number of extensions: 178992
Number of successful extensions: 547
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)