Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_I02
(462 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 193 1e-50
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 122 2e-29
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 111 7e-26
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 83 2e-17
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 77 1e-15
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 74 9e-15
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 73 2e-14
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 73 3e-14
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 72 4e-14
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 70 2e-13
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 69 3e-13
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 67 1e-12
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 64 8e-12
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 64 8e-12
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 61 7e-11
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 60 2e-10
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 58 5e-10
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 58 9e-10
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 57 1e-09
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 53 2e-08
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 44 9e-06
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 38 6e-04
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 38 6e-04
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 36 0.004
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 33 0.028
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 30 0.15
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 29 0.35
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 1.4
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom... 26 3.2
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 26 3.2
SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce... 26 3.2
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 4.3
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 5.6
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 25 7.4
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 193 bits (471), Expect = 1e-50
Identities = 86/150 (57%), Positives = 113/150 (75%)
Frame = +1
Query: 10 NWDSLSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDY 189
+W + +L PF KDFY H++V +RS EV +YR + E+ V G+ VP P+ FEEA FP+Y
Sbjct: 73 DWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNY 132
Query: 190 VCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR 369
V + +K +G++ PTPIQ Q WP+AMSG+++VG++ TGSGKTL+Y LPAIVHIN QP +
Sbjct: 133 VLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSP 192
Query: 370 GDGPIALVLAPTRELGQQIQQVASEFGNSS 459
GDGPI LVLAPTREL QIQQ ++FG SS
Sbjct: 193 GDGPIVLVLAPTRELAVQIQQECTKFGKSS 222
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 122 bits (295), Expect = 2e-29
Identities = 55/143 (38%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Frame = +1
Query: 22 LSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHE-VTVSGVEVPNPIEHFEEANFPDYVCQ 198
++ + F KDFY + + + SP EV++ R + + + G++ P P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 199 AIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG 378
I S+GY+ PT IQAQ P SG++++GVA+TGSGKT+A++LP HI +Q P++ G+G
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEG 491
Query: 379 PIALVLAPTRELGQQIQQVASEF 447
PIA+++ PTREL QI + F
Sbjct: 492 PIAIIMTPTRELAVQIFRECKPF 514
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 111 bits (266), Expect = 7e-26
Identities = 48/117 (41%), Positives = 79/117 (67%), Gaps = 3/117 (2%)
Frame = +1
Query: 106 RNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVG 285
+ + +++ G ++PNP+ ++EEA P + + +K + YK+P+ IQ P+ + K+L+G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 286 VAQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELGQQIQQVASEF 447
+A+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTREL QQIQ ++F
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKF 348
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 83.0 bits (196), Expect = 2e-17
Identities = 42/99 (42%), Positives = 61/99 (61%), Gaps = 1/99 (1%)
Frame = +1
Query: 163 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 342
F+E D +C+A + +G+K PTPIQ + P+ ++ ++++G+AQTGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 343 I-NNQPPIRRGDGPIALVLAPTRELGQQIQQVASEFGNS 456
+ NN P A+VLAPTREL QI + G S
Sbjct: 108 LWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGS 140
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 77.0 bits (181), Expect = 1e-15
Identities = 41/110 (37%), Positives = 68/110 (61%), Gaps = 3/110 (2%)
Frame = +1
Query: 103 YRNKHEVTVSGVEVPN---PIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGK 273
Y KH ++ + + PI F+E + + + +K+ YK+PTPIQA WP ++G+
Sbjct: 146 YIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGR 203
Query: 274 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELGQQ 423
++VG+A+TGSGKT+A+ +PA+ ++N + P LV++PTREL Q
Sbjct: 204 DVVGIAETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQ 251
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 74.1 bits (174), Expect = 9e-15
Identities = 39/94 (41%), Positives = 54/94 (57%)
Frame = +1
Query: 163 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 342
F+ N ++ A+ + G+K TP+QA P+ + K+LV A TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 343 INNQPPIRRGDGPIALVLAPTRELGQQIQQVASE 444
+ + G G AL++APTREL QI V E
Sbjct: 63 VTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 72.9 bits (171), Expect = 2e-14
Identities = 44/120 (36%), Positives = 71/120 (59%), Gaps = 2/120 (1%)
Frame = +1
Query: 91 EVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSG 270
E ED R + V ++ + IE F + + + +AIK MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 271 KNLVGVAQTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELGQQIQQVASE 444
++++G A+TGSGKTLA+++P I ++ P R G G ++++PTREL QI VA E
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPTRELALQIFGVAKE 183
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 72.5 bits (170), Expect = 3e-14
Identities = 38/102 (37%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Frame = +1
Query: 133 GVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 312
G+ + + F + N + +AI ++ PT +Q++ P+A+ GK+LV A+TGSGKT
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 313 LAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELGQQIQQV 435
AY++P + + Q I G AL+L PTREL QQ+ V
Sbjct: 66 AAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 72.1 bits (169), Expect = 4e-14
Identities = 35/100 (35%), Positives = 58/100 (58%)
Frame = +1
Query: 160 HFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIV 339
+F+ + +AI G+K PTPIQ + P+ + G+++VG+A+TGSGKT A+++P I
Sbjct: 70 NFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIE 129
Query: 340 HINNQPPIRRGDGPIALVLAPTRELGQQIQQVASEFGNSS 459
H+ + AL+L+P REL Q +V +F +
Sbjct: 130 HLKS---TLANSNTRALILSPNRELALQTVKVVKDFSKGT 166
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 70.1 bits (164), Expect = 2e-13
Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 13/122 (10%)
Frame = +1
Query: 121 VTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTG 300
V VSG ++ P+ F ++ Q IK GY PTP+Q PI SG++L+ AQTG
Sbjct: 158 VEVSGGDI-EPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 301 SGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELGQQIQQVAS 441
SGKT ++ P + + + P P+ + G P L+LAPTREL QI + +
Sbjct: 217 SGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESR 276
Query: 442 EF 447
+F
Sbjct: 277 KF 278
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 68.9 bits (161), Expect = 3e-13
Identities = 34/97 (35%), Positives = 58/97 (59%)
Frame = +1
Query: 163 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 342
F+ N + + + ++G++ PT IQ + P+A+ GK++VG A TGSGKT A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 343 INNQPPIRRGDGPIALVLAPTRELGQQIQQVASEFGN 453
+ +P ++ L+L PTREL Q VA++ +
Sbjct: 321 LLYRP--KKVPTTRVLILCPTRELAMQCHSVATKIAS 355
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 66.9 bits (156), Expect = 1e-12
Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Frame = +1
Query: 16 DSLSLQPFNKDFYN--PHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDY 189
D+L L N F N P S+ ++ +++ K + V+G +PIE F E
Sbjct: 2 DALKLLTTNVKFKNKVPQPSIKEKEAKKLQGI-TKGKAKVTGNNPVDPIEEFPEG----I 56
Query: 190 VCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR 369
+C+ +K + T IQ P S ++L+ A TGSGKT+AY+ P + + P
Sbjct: 57 LCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP--- 113
Query: 370 GDGPIALVLAPTRELGQQIQQVASE--FGNS 456
G A+++APTREL +QI + A + FG S
Sbjct: 114 -GGYRAIIVAPTRELCEQIYRQAEKLSFGTS 143
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 64.5 bits (150), Expect = 8e-12
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 9/123 (7%)
Frame = +1
Query: 109 NKHEVTVSGVEV---PNP----IEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMS 267
NK+EV V ++ PN ++ FEE + + I SM ++ P+ IQ + P+ +S
Sbjct: 91 NKNEVRVKLADLQADPNSPLFSVKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLS 150
Query: 268 G--KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELGQQIQQVAS 441
+N++G +Q+G+GKT A+ L + ++ P P A+ LAP+REL +QI V +
Sbjct: 151 NPPRNMIGQSQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQIMDVVT 205
Query: 442 EFG 450
E G
Sbjct: 206 EMG 208
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 64.5 bits (150), Expect = 8e-12
Identities = 37/99 (37%), Positives = 57/99 (57%)
Frame = +1
Query: 154 IEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 333
++HF E A+K+ + T IQ Q P A+ G++++G A+TGSGKTLA+I+P
Sbjct: 38 VDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPL 97
Query: 334 IVHINNQPPIRRGDGPIALVLAPTRELGQQIQQVASEFG 450
I ++ + DG ALV++PTREL Q + + G
Sbjct: 98 IENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIG 135
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 61.3 bits (142), Expect = 7e-11
Identities = 31/96 (32%), Positives = 54/96 (56%)
Frame = +1
Query: 163 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 342
FE+ + I G++ P+PIQ + PIA+SG++++ A+ G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 343 INNQPPIRRGDGPIALVLAPTRELGQQIQQVASEFG 450
++ + + L+L PTREL Q QV G
Sbjct: 106 VDTKKSKIQ-----TLILVPTRELALQTSQVCKTLG 136
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 59.7 bits (138), Expect = 2e-10
Identities = 48/125 (38%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Frame = +1
Query: 64 KSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQA 243
K+ + S E ED N H V VS HF + P+ + K+ G+ P PIQ+
Sbjct: 100 KNYNEFSTLEEEDEHNSHGVDVSAWA------HFSLS--PEMLGSLSKA-GFSKPMPIQS 150
Query: 244 QGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTRELG 417
P A G +++G A TGSGKTLA+ +P + H +R D ALV+APTREL
Sbjct: 151 LVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELA 205
Query: 418 QQIQQ 432
QI Q
Sbjct: 206 HQICQ 210
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 58.4 bits (135), Expect = 5e-10
Identities = 33/96 (34%), Positives = 49/96 (51%)
Frame = +1
Query: 163 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 342
F + ++ +K++ +PT IQ + G+N +G A+TGSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 343 INNQPPIRRGDGPIALVLAPTRELGQQIQQVASEFG 450
+ P G AL+L PTREL QI + + G
Sbjct: 69 WSKDP-----SGIFALILTPTRELAIQIDEQFAALG 99
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 57.6 bits (133), Expect = 9e-10
Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Frame = +1
Query: 211 MGYKDPTPIQAQGWPIAMS--GKNLVGVAQTGSGKTLAYILPAIVHINNQPP--IRRGDG 378
M PT IQ+ P ++ K+ AQTGSGKTLAY+LP + + P R G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 379 PIALVLAPTRELGQQIQQVASEFGNS 456
A+++APTREL QQI VA++ N+
Sbjct: 217 IYAVIMAPTRELCQQIYNVANKLNNN 242
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 57.2 bits (132), Expect = 1e-09
Identities = 36/112 (32%), Positives = 61/112 (54%)
Frame = +1
Query: 118 EVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQT 297
E+T S E N + FEE N + + + I + GY+ P+ +Q++ G++++ AQ+
Sbjct: 10 ELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQS 67
Query: 298 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELGQQIQQVASEFGN 453
G+GKT + + + I+ +R AL+L+PTREL QIQ V G+
Sbjct: 68 GTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNVVLALGD 114
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 52.8 bits (121), Expect = 2e-08
Identities = 30/100 (30%), Positives = 57/100 (57%)
Frame = +1
Query: 154 IEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 333
I+ F++ N + + I + G++ P+ IQ + + ++++ AQ+G+GKT + +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 334 IVHINNQPPIRRGDGPIALVLAPTRELGQQIQQVASEFGN 453
+ I+ +++ AL+LAPTREL QQIQ+V G+
Sbjct: 78 LQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALGD 112
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 44.4 bits (100), Expect = 9e-06
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Frame = +1
Query: 130 SGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGW-PIAMSGKNLVGVAQTGSG 306
S ++ P E A+ ++ G++ TP+Q + + + +N V A+TG+G
Sbjct: 29 STMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTG 88
Query: 307 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELGQQIQQVA 438
KTLA++L A + P +++L+PTREL QI + A
Sbjct: 89 KTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEA 132
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 38.3 bits (85), Expect = 6e-04
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +1
Query: 274 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELGQQIQQVASEFG 450
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q + +E G
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDMMLRVNEKG 1265
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 38.3 bits (85), Expect = 6e-04
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +1
Query: 274 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELGQQIQQVASEFG 450
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q + +E G
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDMMLRVNEKG 1265
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 35.5 bits (78), Expect = 0.004
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = +1
Query: 253 PIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELGQQI 426
P+ G ++ A TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 32.7 bits (71), Expect = 0.028
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Frame = +1
Query: 91 EVEDYRNKHEVTVSGVEVPNPI--EHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAM 264
E EDY+ E+ V + + E E + D +C+ + Y+ IQ+ +PIA
Sbjct: 232 EREDYQKYEEIIVPHAQRAPQMQGEKLLEISSMDILCRKT-FLSYQTLNRIQSLVYPIAY 290
Query: 265 -SGKNLVGVAQTGSGKTLAYILPAIVHINN 351
+ +N++ A TG+GKT +L + I+N
Sbjct: 291 KTNENMLICAPTGAGKTDVALLAMLQTISN 320
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 30.3 bits (65), Expect = 0.15
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 262 MSGKNLVGVAQTGSGKTLAYILPAIV 339
+SGK++ + TG GK+L Y LPA++
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI 557
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 29.1 bits (62), Expect = 0.35
Identities = 10/40 (25%), Positives = 25/40 (62%)
Frame = -1
Query: 204 YCLTHIIWKVCLFKMFNRIRYFNSTNSDFVFVSIVLYFIW 85
+ ++++I + L ++F+ +R+ N+ ++F SIV + W
Sbjct: 856 WAVSNLILAIVLIQVFDGMRFINNGYMKYIFWSIVAFTAW 895
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.1 bits (57), Expect = 1.4
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +1
Query: 85 PYEVEDYRNKHEVTVSGVE-VPNPI 156
PYE++ YRNKH +S + +PN +
Sbjct: 253 PYEIQVYRNKHWFPISTEDLLPNDV 277
>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 370
Score = 25.8 bits (54), Expect = 3.2
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 202 IKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 375
+ ++GY D P G P+ ++GK + V GK +L + + + P ++RGD
Sbjct: 280 VVAIGYGDGFPQVRNGCPVIINGKRVPTV-----GKVCMDML--AIDVTDVPDVKRGD 330
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 25.8 bits (54), Expect = 3.2
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +3
Query: 168 RGKLSRLCVSSNKKYGLQRSYPYT---GSRMANRYVREKLG 281
+ K++ +C+S + KY L P+T NR VR+ +G
Sbjct: 383 QSKVTSICLSKDSKYALTNLEPHTTFLWDLEENRIVRQYMG 423
>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 56
Score = 25.8 bits (54), Expect = 3.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 171 GKLSRLCVSSNKKYGLQRSYPYTGSRMANRYVREKLGW 284
GK SR C + ++ GL R Y SR + R +G+
Sbjct: 15 GKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGF 52
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.4 bits (53), Expect = 4.3
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +1
Query: 64 KSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYK 222
+ D P +DYR+ +T S + N + +E + Y+CQ + S+ +
Sbjct: 919 REAFDGRPDFSKDYRSLLSITQSCNTLSNFYRNAQEKSLHAYLCQLLHSINLR 971
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.0 bits (52), Expect = 5.6
Identities = 25/121 (20%), Positives = 42/121 (34%)
Frame = +1
Query: 40 NKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGY 219
N YNP ++ L R+P + S P P +N P ++KS
Sbjct: 342 NASTYNPPRAPLQRTPSGSLTPLSSRPAHTS--LPPIPTVQTTSSNVPPVNRPSLKSKSP 399
Query: 220 KDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLA 399
+ Q PI+ + +++ Q S A + P +RR D ++
Sbjct: 400 SVSNILSNQLSPISSANNDVMARLQPKSPIPATKSYSATIQTPRSPSLRRADSTSHIIKV 459
Query: 400 P 402
P
Sbjct: 460 P 460
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 24.6 bits (51), Expect = 7.4
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 25 SLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNP 153
S+ +NKD N K RS ++ + K + S VE+ P
Sbjct: 744 SVNDYNKDETNFRKHNAKRSKTDIRSWFEKKQPIDSDVEISEP 786
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.134 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,045,008
Number of Sequences: 5004
Number of extensions: 43348
Number of successful extensions: 130
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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