Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_I02
         (462 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       85   4e-19
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.1  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   2.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   2.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   2.8  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   6.5  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   6.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 85.0 bits (201), Expect = 4e-19
 Identities = 49/118 (41%), Positives = 66/118 (55%), Gaps = 4/118 (3%)
 Frame = +1

Query: 118 EVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQT 297
           +V VSG  VP PIE FE A   + V   IK  GYK PTP+Q    PI M+G++L+  AQT
Sbjct: 183 QVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQT 242

Query: 298 GSGKTLAYILPAIVHINNQP----PIRRGDGPIALVLAPTRELGQQIQQVASEFGNSS 459
           GSGKT A+ +P I  +  +            P  ++++PTREL  QI Q   +F  +S
Sbjct: 243 GSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNS 300


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 402 NKRTWSTNTAGC 437
           N RTW+TN   C
Sbjct: 769 NDRTWNTNAVDC 780


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +2

Query: 23  CRSNHLTKIFIILINQSWIGHHMK 94
           C  NHL ++  +    +W+ H +K
Sbjct: 99  CIENHLKQLGYVQKLDTWVPHELK 122


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +1

Query: 112 KHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMG 216
           K EVT  GV     I   E ++   Y CQA    G
Sbjct: 860 KREVTPDGVIAQLQISSAEASDSGAYFCQASNLYG 894


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +1

Query: 112 KHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMG 216
           K EVT  GV     I   E ++   Y CQA    G
Sbjct: 856 KREVTPDGVIAQLQISSAEASDSGAYFCQASNLYG 890


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 167 SKCSIGLGTSTPLTVTS 117
           S+CS+G  +ST  T +S
Sbjct: 174 SECSLGTASSTSSTASS 190


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 281 TKFFPDIAIGHP 246
           TKF PD+ + HP
Sbjct: 189 TKFEPDLDMNHP 200


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.134    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,158
Number of Sequences: 438
Number of extensions: 3199
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)