Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_I01
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   3.0  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   9.2  
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi...    25   9.2  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +1

Query: 73   SQSAFFYIKKICQTLFNLPKFCVKVFRCSLKKTIFIF 183
            +++AF Y +   Q + + P+ C++ FRC+L+  +  F
Sbjct: 1607 TKAAFVY-QLHKQGILSEPELCIQFFRCNLEAVLVAF 1642


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 206 IDTYYIQSKMKMVFFNEHRNTFTQNFGK 123
           +DTY       + F N + ++F QN+GK
Sbjct: 246 VDTYIGLYYYDLAFQNVNNDSFVQNYGK 273


>SPBC1539.01c |||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 222 CNKNAYRYLLYSVKNE-NGFF**ASKYFYAKFW*IEKSL 109
           CN+N YRY + S + + + FF   S+ F  K +  +KSL
Sbjct: 35  CNENKYRYEMTSTEEDIDSFF---SRVFGEKNYISDKSL 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,924,124
Number of Sequences: 5004
Number of extensions: 36196
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)