Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_I01
         (529 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0048 + 335868-336682,338382-340386                               28   5.3  
12_01_0395 - 3117315-3118117,3118354-3118478,3118558-3118770,311...    27   7.1  
04_04_0170 - 23268714-23268950,23269040-23269303,23269379-232694...    27   9.3  

>08_01_0048 + 335868-336682,338382-340386
          Length = 939

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 47  SIPFFTNYSRNLPFFTLKKYVRLFSI 124
           S+  F   SR LPF  L KY+R+  I
Sbjct: 565 SVSVFGECSRGLPFLMLSKYIRVVHI 590


>12_01_0395 -
           3117315-3118117,3118354-3118478,3118558-3118770,
           3118850-3120076,3120537-3120622,3121197-3121223
          Length = 826

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 240 ITVLEMCNKNAYRYLLYSVKNENG 169
           ITV E+C    Y+ LL S KN NG
Sbjct: 10  ITVCEVCGVLGYKNLLLSCKNCNG 33


>04_04_0170 -
           23268714-23268950,23269040-23269303,23269379-23269494,
           23269574-23269792,23269961-23270080,23270170-23270283,
           23271870-23271946,23272527-23272657
          Length = 425

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 179 MKMVFFNEHRNTFTQNFGKLKRV*HIFLM*KKADCDYNS*KMECYFIY 36
           +K +  NEH  TF +    L  V H  L+  +  CD      EC+ +Y
Sbjct: 163 VKHIVKNEHAETFLREVTSLSHVRHPNLVSLRGYCDGQE---ECFLVY 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,066,023
Number of Sequences: 37544
Number of extensions: 155314
Number of successful extensions: 226
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)