Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_I01
         (529 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72502-1|CAA96585.2|  430|Caenorhabditis elegans Hypothetical pr...    28   3.6  
AC006730-6|AAX22282.1|  324|Caenorhabditis elegans Serpentine re...    27   6.3  
AC006730-5|AAF60478.4|  320|Caenorhabditis elegans Serpentine re...    27   6.3  
AF039051-10|AAB94259.3|  313|Caenorhabditis elegans Serpentine r...    27   8.3  
AF016451-1|AAB66002.2|  294|Caenorhabditis elegans Serpentine re...    27   8.3  

>Z72502-1|CAA96585.2|  430|Caenorhabditis elegans Hypothetical
           protein C08B6.2 protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = -1

Query: 427 IRLVKVLFVISFFTIYLFGFRYN*YNCYKFLILVFSLHFNIHIN 296
           I+++ +L   +FF ++LF F +N    + ++I +    FN++ N
Sbjct: 376 IQIITLLDQENFFVLHLFCFYHNIKYFFYYIIFMLLFSFNLNYN 419


>AC006730-6|AAX22282.1|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein40, isoform b protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -1

Query: 412 VLFVISFFTIYLFGFRYN*YNCYKFLILVFSL 317
           + F+++ FTIYL  F+ +  + +++ ILVF L
Sbjct: 21  ISFLLNTFTIYLALFKSDTIDNFRYCILVFQL 52


>AC006730-5|AAF60478.4|  320|Caenorhabditis elegans Serpentine
           receptor, class i protein40, isoform a protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -1

Query: 412 VLFVISFFTIYLFGFRYN*YNCYKFLILVFSL 317
           + F+++ FTIYL  F+ +  + +++ ILVF L
Sbjct: 21  ISFLLNTFTIYLALFKSDTIDNFRYCILVFQL 52


>AF039051-10|AAB94259.3|  313|Caenorhabditis elegans Serpentine
           receptor, class i protein73 protein.
          Length = 313

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 412 VLFVISFFTIYLFGFRYN*YNCYKFLILVFSL 317
           +  +++ F IYL  F+ N  + +K+ +LVF L
Sbjct: 22  ISLLLNLFGIYLLLFKSNQLDSFKYYLLVFQL 53


>AF016451-1|AAB66002.2|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein38 protein.
          Length = 294

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 447 LCYWSHLCQRMFVIVYD 497
           L YWSHLC    +I YD
Sbjct: 72  LDYWSHLCGYFLMICYD 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,361,373
Number of Sequences: 27780
Number of extensions: 193906
Number of successful extensions: 418
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)