Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_I01
         (529 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   3.4  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +2

Query: 203 LYAFLLHISKTVIK*TRYIIILLGK*LIFSDIYMNIKM 316
           L+ F L + + +I  T  ++ LLGK LIF+ I ++I +
Sbjct: 286 LHVFFLLVVE-IIPPTSLVVPLLGKYLIFAMILVSISI 322


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +2

Query: 203 LYAFLLHISKTVIK*TRYIIILLGK*LIFSDIYMNIKM 316
           L+ F L + + +I  T  ++ LLGK LIF+ I ++I +
Sbjct: 286 LHVFFLLVVE-IIPPTSLVVPLLGKYLIFAMILVSISI 322


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 30  IYIYKIAFHFLRIIVAICLFLH*KNMSDSFQF 125
           +Y   +A  F+RI   IC+ L   + S   QF
Sbjct: 235 VYFLNMASVFMRIFNLICMMLLIGHWSGCLQF 266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,517
Number of Sequences: 438
Number of extensions: 2696
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)