Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_H24
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    28   0.97 
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    25   6.8  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   9.0  
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual    25   9.0  
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma...    25   9.0  

>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +3

Query: 324 QLVFSLGDKPQMDTHG-AMYIRRDAIPDKHTWTAKLL 431
           +L+    D  Q+  H   MY      PDKHTW A LL
Sbjct: 749 RLIMGFRDLTQVLAHDLGMYADYGPGPDKHTWGAALL 785


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 23/76 (30%), Positives = 32/76 (42%)
 Frame = -1

Query: 510 PLGVPTHPPAESLGSIPRKIMCFLECRAV*RSKYVYLG*RPDEYTWLHEYPFAVYHLERR 331
           PL +P    AE L + P      L    +  S +V     P  YT +H  PF+   +   
Sbjct: 23  PLTIPHTVSAEGLAT-PNTPHALLPTGLLMGSPFVQ---SPTSYTSMHGLPFSTTQMAAA 78

Query: 330 QAGPRSIGFIVSPVKS 283
            A P + G+ VS V S
Sbjct: 79  PAHP-TTGYNVSRVTS 93


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = -2

Query: 191 LGILPRVEMHDIDDKRLHYLYLFKNI---FTRTTRDTFCTSLT 72
           L +LP  ++ +I DKR  Y  L  N     ++ +R+ F  SL+
Sbjct: 487 LSVLPNEDLMEIADKRPSYRQLLYNCCVEISQFSREDFSNSLS 529


>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -3

Query: 253 RTMVVVGFSSLITSYF 206
           +T+++V FS L+TSYF
Sbjct: 75  KTVLIVWFSLLVTSYF 90


>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 150 IVDVVHFYPRENAQTHNSMKYEVINEEN--PTTTIVRRGA 263
           ++D+  FYPR +    +  + E +N EN  P   ++ +G+
Sbjct: 237 LIDINPFYPRTDGLLFSWSELESMNSENMKPEIRLIPKGS 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,351,280
Number of Sequences: 5004
Number of extensions: 49054
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)