Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_H24
         (522 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0527 - 4177928-4178235,4178849-4181438                           31   0.74 
07_01_0683 - 5145539-5145601,5146113-5146146,5146549-5146650,514...    27   6.9  

>12_01_0527 - 4177928-4178235,4178849-4181438
          Length = 965

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 396 IPDKHTWTAKLLDIQENTLSFEVSTPVTLPVGVWALQV 509
           IP   T   K+LD+  N LS  + + +  PVG+W + +
Sbjct: 298 IPSGITKNVKMLDLSYNELSGVIPSDILSPVGLWTVDL 335


>07_01_0683 -
           5145539-5145601,5146113-5146146,5146549-5146650,
           5147398-5147658,5148729-5148832,5148999-5149246,
           5149360-5149420,5149507-5149682,5149787-5149844,
           5150804-5150908,5150995-5151228
          Length = 481

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 167 FLPEGECPNTQLYEIRSNQRREPHNDH 247
           FLPE    N Q+      Q+ EPH D+
Sbjct: 129 FLPEENAENIQILRYEHGQKYEPHFDY 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,971,147
Number of Sequences: 37544
Number of extensions: 305549
Number of successful extensions: 669
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)