Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_H24
         (522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D38472-1|BAA07492.1|  495|Caenorhabditis elegans elongation fact...    29   2.7  
D38471-1|BAA07491.1|  496|Caenorhabditis elegans elongation fact...    29   2.7  
AC024859-25|AAK29979.1|  496|Caenorhabditis elegans Tu elongatio...    29   2.7  
AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical ...    27   6.2  
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    27   6.2  

>D38472-1|BAA07492.1|  495|Caenorhabditis elegans elongation factor
           Tu homologueprecursor protein.
          Length = 495

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 449 IIFRGIDPSDSAGGCVGTPSGHQ 517
           ++ RG+ P D   GCV  P GH+
Sbjct: 321 VLLRGLGPKDVRRGCVLLPQGHK 343


>D38471-1|BAA07491.1|  496|Caenorhabditis elegans elongation factor
           Tu homologueprecursor protein.
          Length = 496

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 449 IIFRGIDPSDSAGGCVGTPSGHQ 517
           ++ RG+ P D   GCV  P GH+
Sbjct: 322 VLLRGLGPKDVRRGCVLLPQGHK 344


>AC024859-25|AAK29979.1|  496|Caenorhabditis elegans Tu elongation
           factor (ef-tu), mitochondrialprotein 1 protein.
          Length = 496

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 449 IIFRGIDPSDSAGGCVGTPSGHQ 517
           ++ RG+ P D   GCV  P GH+
Sbjct: 322 VLLRGLGPKDVRRGCVLLPQGHK 344


>AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical
            protein Y43D4A.5 protein.
          Length = 1648

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 369  HEYPFAVYHLERRQAGPRSIGFIVSPVKS 283
            H   FA   LE +QAG  SI  I+SPV +
Sbjct: 1532 HNQHFAAVFLEPQQAGILSIPLILSPVST 1560


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
            protein Y47G6A.29 protein.
          Length = 2460

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 173  VEMHDIDDKRLHYLY 129
            V MHD D KRLH+L+
Sbjct: 1074 VRMHDADTKRLHFLW 1088


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,055,567
Number of Sequences: 27780
Number of extensions: 276023
Number of successful extensions: 638
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)