Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_H23
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    92   3e-20
SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    62   3e-11
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    47   1e-06
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    27   0.96 
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    26   2.9  
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    25   3.9  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    25   6.7  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    24   8.9  

>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 92.3 bits (219), Expect = 3e-20
 Identities = 47/113 (41%), Positives = 64/113 (56%)
 Frame = +2

Query: 11  KMMSKSPGMKFDLVETELDLTYSTRYKEASVPDAYERLILDVFTGTQMHFVRNDELKEAW 190
           KM  K PG+    + T+LDLTYS R+K   + +AYE L LD F G Q  F R DEL+ AW
Sbjct: 383 KMNIKQPGLSEAPLLTDLDLTYSRRFKNMKLHEAYEALFLDAFAGDQSRFARIDELECAW 442

Query: 191 RIFTPILKELEEKRVKPLPYVYGSRGPKEADGKLLEYDFKYSGSYKWQKPAES 349
            +  P+LK +EE++  P PY YGS GP+     L ++ + Y     +  P  S
Sbjct: 443 SLVDPLLKYMEEEKPVPEPYEYGSDGPECLYSFLKKFGYIYDSPDYYDYPVMS 495


>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 475

 Score = 62.5 bits (145), Expect = 3e-11
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
 Frame = +2

Query: 23  KSPGMKFDLVETELDLTYSTRYKEASVPDAYERLILDVFTGTQMHFVRNDELKEAWRIFT 202
           K PG    +V   LD+ Y   + +  +  AYE +I D   G   HF+ +DE++ +W+IF 
Sbjct: 379 KQPGFSRQIVPVTLDVKYPEAFPDTWIHKAYEVVIADAINGKHTHFISDDEVRTSWKIFD 438

Query: 203 PILKELEEKRVKPLPYVYGS-RGP 271
            +L    +  + PLPY +GS  GP
Sbjct: 439 DVLDTTGD--LSPLPYAFGSHHGP 460


>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 47.2 bits (107), Expect = 1e-06
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = +2

Query: 50  VETELDLTYSTRYKEASVP--DAYERLILDVFTGTQMHFVRNDELKEAWRIFTPILKELE 223
           ++    L Y+ ++K+      D YE L  D   G    F+R DE++ AW+I+  IL    
Sbjct: 388 IDAYASLNYNEQFKDLMKEKRDGYEILFEDAIRGDPTKFIRYDEVEYAWKIWDEIL---- 443

Query: 224 EKRVKPLPYVYGSRGPK 274
           +   KP+PY  GS GP+
Sbjct: 444 DSPKKPIPYPAGSDGPE 460


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 27.5 bits (58), Expect = 0.96
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 182 LSTHHYARNASVYP*IHPKLVFHMHQEH 99
           L+TH        Y  IHP +V H HQ++
Sbjct: 72  LNTHRTISKYEAYGGIHPTIVIHEHQKN 99


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +2

Query: 152 MHFVRNDELKEAWRIFTPILKELEEKRVK 238
           MH + +D +K+  +I   + K++EE+R++
Sbjct: 339 MHVLGDDAIKDPTKIEAEVRKQVEERRLR 367


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 173 ELKEAWRIFTPILKELEE 226
           E KE+W  F P  +ELEE
Sbjct: 329 EQKESWSAFAPDFQELEE 346


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 303 SYSNSLPSASLGPLDP*T 250
           SYS + P+ S+GPL P T
Sbjct: 546 SYSTTTPAFSIGPLTPMT 563


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = +3

Query: 216 SWKRSV*NHYPMFMDLEVPKKLMVNY*NMTLNTQVHINGRNQQNHNGVEIS 368
           S+  +  +H P  M    P   +  Y  +++N+    +G+N    NG  +S
Sbjct: 491 SYSHNSYSHIPPVMSTSPPNHSVYPYSQLSINSVTANHGQNFGGQNGGNVS 541


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,730,190
Number of Sequences: 5004
Number of extensions: 34643
Number of successful extensions: 95
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)