Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_H23
(437 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0298 + 24228569-24228763,24229792-24229900,24230001-242300... 122 2e-28
02_04_0500 + 23500769-23500951,23501200-23501285,23501442-235014... 119 1e-27
07_03_0018 - 12490940-12491195,12491575-12491775,12492174-124924... 102 1e-22
03_04_0053 + 16873735-16873927,16874011-16874162,16874286-168743... 96 9e-21
03_02_0812 - 11439258-11439409,11439537-11439612,11439860-114400... 81 3e-16
10_06_0180 + 11526139-11526172,11526365-11527218 28 2.9
>04_04_0298 + 24228569-24228763,24229792-24229900,24230001-24230069,
24230159-24230262,24230361-24230490,24231270-24231374,
24231479-24231689,24231917-24231927,24232331-24232341,
24233863-24233979,24234376-24234441,24234728-24234790,
24236577-24236652,24238003-24238064,24238573-24238658,
24238978-24239026,24239099-24239279,24239448-24239596,
24239682-24239750,24240920-24240991,24241122-24241269,
24241403-24241498,24242024-24242094,24242223-24242338,
24242453-24242498,24242611-24242781
Length = 860
Score = 122 bits (293), Expect = 2e-28
Identities = 54/111 (48%), Positives = 73/111 (65%)
Frame = +2
Query: 8 VKMMSKSPGMKFDLVETELDLTYSTRYKEASVPDAYERLILDVFTGTQMHFVRNDELKEA 187
+K+ K PG++ ++ELDL+Y RY+ +P+AYERLILD G Q HFVR DELK A
Sbjct: 747 MKLTVKKPGLEMATEQSELDLSYGMRYQNVKIPEAYERLILDTIRGDQQHFVRRDELKAA 806
Query: 188 WRIFTPILKELEEKRVKPLPYVYGSRGPKEADGKLLEYDFKYSGSYKWQKP 340
W+IFTP+L +++E +VK +PY GSRGPKEAD + + Y W P
Sbjct: 807 WQIFTPLLHDIDEGKVKSIPYQPGSRGPKEADELSERVGYMQTHGYIWIPP 857
>02_04_0500 +
23500769-23500951,23501200-23501285,23501442-23501490,
23501560-23501746,23502214-23502371,23502447-23502515,
23502692-23502750,23503140-23503176,23503493-23503564,
23503694-23503841,23504124-23504219,23505042-23505181,
23505304-23505419,23505614-23505659,23505747-23505923
Length = 540
Score = 119 bits (286), Expect = 1e-27
Identities = 53/114 (46%), Positives = 73/114 (64%)
Frame = +2
Query: 8 VKMMSKSPGMKFDLVETELDLTYSTRYKEASVPDAYERLILDVFTGTQMHFVRNDELKEA 187
+K+ K PG++ ++ELDL+Y RY++ +P+AYERLILD G Q HFVR DELK A
Sbjct: 425 MKLTVKKPGLEMATEQSELDLSYGLRYQDVKIPEAYERLILDTIRGDQQHFVRRDELKAA 484
Query: 188 WRIFTPILKELEEKRVKPLPYVYGSRGPKEADGKLLEYDFKYSGSYKWQKPAES 349
W IFTP+L ++++ +VK LPY G+RGP EAD + + Y W P S
Sbjct: 485 WEIFTPLLHDIDDGKVKALPYKPGTRGPPEADELSKRMGYVQTHGYVWIPPTLS 538
>07_03_0018 -
12490940-12491195,12491575-12491775,12492174-12492403,
12492624-12492744,12492823-12492972,12493106-12493314,
12494120-12494234,12494346-12494440,12494523-12494758,
12496182-12496338
Length = 589
Score = 102 bits (244), Expect = 1e-22
Identities = 50/110 (45%), Positives = 70/110 (63%)
Frame = +2
Query: 8 VKMMSKSPGMKFDLVETELDLTYSTRYKEASVPDAYERLILDVFTGTQMHFVRNDELKEA 187
+K+ +K PG+ L + L+L Y+ RY + +PDAYERL+LD G + F+R+DEL A
Sbjct: 480 LKINNKIPGLGMRLDRSNLNLHYAARYSK-EIPDAYERLLLDAIEGERRLFIRSDELDAA 538
Query: 188 WRIFTPILKELEEKRVKPLPYVYGSRGPKEADGKLLEYDFKYSGSYKWQK 337
W +FTP+LKELEEKR+ P Y YGSRGP A +Y+ ++ QK
Sbjct: 539 WELFTPLLKELEEKRIAPELYPYGSRGPVGAHYLAAKYNVRWGDLTTEQK 588
>03_04_0053 +
16873735-16873927,16874011-16874162,16874286-16874380,
16874704-16874818,16875054-16875343,16875436-16875585,
16876478-16876598,16876671-16876942,16877466-16877937
Length = 619
Score = 96.3 bits (229), Expect = 9e-21
Identities = 46/88 (52%), Positives = 60/88 (68%)
Frame = +2
Query: 8 VKMMSKSPGMKFDLVETELDLTYSTRYKEASVPDAYERLILDVFTGTQMHFVRNDELKEA 187
+K+ SK PG+ L ++L+L YS RY A +PDAYERL+LD G + F+R+DEL A
Sbjct: 515 LKINSKVPGLGMRLDSSDLNLLYSERYP-AEIPDAYERLLLDAIEGERRLFIRSDELDAA 573
Query: 188 WRIFTPILKELEEKRVKPLPYVYGSRGP 271
W IFTP+L +LE +V P Y YGSRGP
Sbjct: 574 WAIFTPVLADLEANKVAPELYPYGSRGP 601
>03_02_0812 -
11439258-11439409,11439537-11439612,11439860-11440076,
11440150-11440350,11440673-11440872,11440955-11441075,
11441596-11441636,11441714-11441822,11442037-11442281,
11442382-11442496,11442970-11443064,11444279-11444535,
11444780-11444999,11445473-11445556
Length = 710
Score = 81.4 bits (192), Expect = 3e-16
Identities = 37/91 (40%), Positives = 56/91 (61%)
Frame = +2
Query: 8 VKMMSKSPGMKFDLVETELDLTYSTRYKEASVPDAYERLILDVFTGTQMHFVRNDELKEA 187
+K+ +K PG+ L +EL+L Y RY +PD+YE L+LDV G F+R+DE+ A
Sbjct: 538 LKVNNKVPGLGLQLDASELNLLYRDRYN-VELPDSYEHLLLDVLDGDSHLFMRSDEVAAA 596
Query: 188 WRIFTPILKELEEKRVKPLPYVYGSRGPKEA 280
W + TP++ E+++ R+ P Y G RGP A
Sbjct: 597 WNVLTPLIHEIDQNRIAPELYEAGGRGPVNA 627
>10_06_0180 + 11526139-11526172,11526365-11527218
Length = 295
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 378 NHHH*FLHHYDSAGFCHLYEPEYLKSYSNSLPS 280
+HHH YD+AGF + P + S S PS
Sbjct: 211 HHHHQTPASYDTAGFTSFFAPSTTLTSSLSFPS 243
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,273,000
Number of Sequences: 37544
Number of extensions: 194227
Number of successful extensions: 414
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -