Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_H23
         (437 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73102-6|CAA97412.1|  522|Caenorhabditis elegans Hypothetical pr...   148   2e-36
Z68315-3|CAA92670.1|  430|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AC006648-5|AAF39853.1|  701|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z73102-6|CAA97412.1|  522|Caenorhabditis elegans Hypothetical
           protein B0035.5 protein.
          Length = 522

 Score =  148 bits (359), Expect = 2e-36
 Identities = 63/111 (56%), Positives = 88/111 (79%)
 Frame = +2

Query: 8   VKMMSKSPGMKFDLVETELDLTYSTRYKEASVPDAYERLILDVFTGTQMHFVRNDELKEA 187
           +K+M+K PGM F + ETELDLTY+ R+KE  +PDAYERL L+VF G+Q++FVR DEL+ A
Sbjct: 410 MKLMTKKPGMGFGVEETELDLTYNNRFKEVRLPDAYERLFLEVFMGSQINFVRTDELEYA 469

Query: 188 WRIFTPILKELEEKRVKPLPYVYGSRGPKEADGKLLEYDFKYSGSYKWQKP 340
           WRI TP+L+EL++K+V+P+ Y +GSRGP E D  + +Y F ++G+YKW  P
Sbjct: 470 WRILTPVLEELKKKKVQPVQYKFGSRGPTEGDELMKKYGFIFTGTYKWVAP 520


>Z68315-3|CAA92670.1|  430|Caenorhabditis elegans Hypothetical
           protein F28C6.3 protein.
          Length = 430

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 5   EVKMMSKSPGMKFDLVETELDLTYSTRYKE-ASVPDAYERLILDV 136
           + K   KS  M+F+ V + LDL Y    +  +S P  YE + L V
Sbjct: 63  DYKAEEKSSPMQFEPVSSGLDLEYDADVQPVSSEPSEYETIYLTV 107


>AC006648-5|AAF39853.1|  701|Caenorhabditis elegans Hypothetical
           protein F59H6.2 protein.
          Length = 701

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/59 (22%), Positives = 27/59 (45%)
 Frame = +2

Query: 125 ILDVFTGTQMHFVRNDELKEAWRIFTPILKELEEKRVKPLPYVYGSRGPKEADGKLLEY 301
           I D++  +++  +  D + +    F  +LK+L +      PY Y  R  +  D   +E+
Sbjct: 556 ITDLYNSSRL--IGKDAITQLSHFFMSVLKDLLQPVYNIWPYTYRPRSVRRVDKNFVEF 612


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,350,248
Number of Sequences: 27780
Number of extensions: 184375
Number of successful extensions: 424
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)