Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_H22
(456 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0124 + 18232961-18236636,18236810-18237288,18237549-182376... 28 3.1
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032... 28 3.1
08_01_0900 + 8867895-8868938,8869887-8870085,8871500-8871713,887... 28 4.1
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 28 4.1
02_04_0640 - 24664841-24664855,24664895-24664978,24665232-246653... 27 5.4
01_04_0141 + 16618916-16619265,16619400-16619418 27 7.2
11_03_0010 - 8922361-8922375,8923888-8924610 27 9.5
10_05_0080 - 8907628-8908182 27 9.5
07_03_1078 - 23789205-23790608,23791155-23791529,23791703-23791792 27 9.5
01_06_1152 + 34939884-34941824 27 9.5
01_06_0906 + 32886693-32886919,32887589-32887708,32887978-328881... 27 9.5
>05_04_0124 + 18232961-18236636,18236810-18237288,18237549-18237629,
18238033-18238041,18238096-18238248
Length = 1465
Score = 28.3 bits (60), Expect = 3.1
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +3
Query: 231 SVSSAPSCSSQRNRPGLRNIELRGTNAFTSLKGCLQNRRPLKTV 362
S SS P+ S R L+++EL N+ TSL +QN LKT+
Sbjct: 1128 SFSSLPA--SIRCLSNLKSLELASNNSLTSLPEGMQNLTALKTL 1169
>05_04_0122 + 18198594-18202269,18202551-18202591,18203273-18203281,
18203336-18203551,18204257-18204361,18204761-18204919
Length = 1401
Score = 28.3 bits (60), Expect = 3.1
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +3
Query: 231 SVSSAPSCSSQRNRPGLRNIELRGTNAFTSLKGCLQNRRPLKTV 362
S SS P+ S R L+++EL N+ TSL +QN LKT+
Sbjct: 1128 SFSSLPA--SIRCLSNLKSLELTSNNSLTSLPEGMQNLTALKTL 1169
>08_01_0900 +
8867895-8868938,8869887-8870085,8871500-8871713,
8871854-8871959,8872077-8872199
Length = 561
Score = 27.9 bits (59), Expect = 4.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 413 RVKCPSIPVKNLRSVHRYCFER 348
R K I + N +HRYCFER
Sbjct: 22 RSKLQDIAITNTLPLHRYCFER 43
>06_03_1283 -
28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = -3
Query: 286 LRRPGRFRCDEHDGAE-ETDVSIGSHSIRIHGFRANVERCNGRETVHSRHC 137
L G C EH+ D IGSH H C+ E VH HC
Sbjct: 865 LHSTGEHACHEHEHEHIHCDEPIGSHCADKHA-------CHDHEQVHEHHC 908
>02_04_0640 -
24664841-24664855,24664895-24664978,24665232-24665319,
24665457-24667318
Length = 682
Score = 27.5 bits (58), Expect = 5.4
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 161 SSITSFNICSEPMNSY*MGADADIGLFCSIVLITAESSG 277
SSI + IC+ P++ + GAD D SI AESSG
Sbjct: 307 SSILNHTICTVPVHGFGFGADHDSDALHSI----AESSG 341
>01_04_0141 + 16618916-16619265,16619400-16619418
Length = 122
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 265 RCDEHDGAEETDVSIGSHSIRIHGFRANVERCNGR 161
RCD G + ++ IG + R +G+R +RC+G+
Sbjct: 25 RCDGRRGGAD-EIVIGGGTDRCNGWRDGGDRCDGQ 58
>11_03_0010 - 8922361-8922375,8923888-8924610
Length = 245
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 118 DKLHSIHSGANALF 159
D+LHSIH G +ALF
Sbjct: 181 DRLHSIHDGLSALF 194
>10_05_0080 - 8907628-8908182
Length = 184
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 228 TSVSSAPSCSSQRNRPGLRNIELRGTNAFTSLKG 329
+S SS PSC+SQ +RP ++ +R +A+ +G
Sbjct: 57 SSRSSPPSCNSQADRPASPSL-IRSPSAWIRARG 89
>07_03_1078 - 23789205-23790608,23791155-23791529,23791703-23791792
Length = 622
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 274 GRFRCDEHDGAEETDVS 224
GR RCD H+G + TD S
Sbjct: 556 GRERCDAHEGIKVTDAS 572
>01_06_1152 + 34939884-34941824
Length = 646
Score = 26.6 bits (56), Expect = 9.5
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -3
Query: 253 HDGAEETDVSIGSHSIR--IHGFRANVERCNGRETVHSRHCG*SAICQKL 110
H GA + + + +R I GFR N+ CN H+R CG A Q+L
Sbjct: 283 HTGARRVGLDVERY-VRDTIPGFRDNLPLCNALINFHAR-CGSLAQAQEL 330
>01_06_0906 +
32886693-32886919,32887589-32887708,32887978-32888101,
32888224-32888361,32888492-32888701,32889085-32889232,
32890452-32890801,32890909-32890963,32891087-32891382,
32891480-32891531,32891740-32891947,32892064-32892446,
32894102-32894538,32895452-32895643
Length = 979
Score = 26.6 bits (56), Expect = 9.5
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -3
Query: 406 SVHRFPSRISGL-CTGTVLSGRRFCKQPFRDVKALVPRSSILRRP-GRFRC 260
S+ +F + IS G+ SG R P +DVK +P S+LR P RF C
Sbjct: 608 SMDKFAALISSFRYAGSRASGLR---APLKDVKNTLPVRSVLRPPEQRFGC 655
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,151,112
Number of Sequences: 37544
Number of extensions: 239537
Number of successful extensions: 600
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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