Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_H22
         (456 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L31785-1|AAA65937.1|  579|Homo sapiens orphan nuclear hormone re...    32   1.1  
D16815-1|BAA20088.1|  579|Homo sapiens EAR-1r protein.                 32   1.1  
CR457434-1|CAG33715.1|  579|Homo sapiens NR1D2 protein.                32   1.1  
BC045613-1|AAH45613.1|  579|Homo sapiens nuclear receptor subfam...    32   1.1  
AB209091-1|BAD92328.1|  549|Homo sapiens Orphan nuclear receptor...    32   1.1  

>L31785-1|AAA65937.1|  579|Homo sapiens orphan nuclear hormone
           receptor BD73 protein.
          Length = 579

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +1

Query: 25  KSGLFDALFVRLICLFDAPLTNIICLNATTF--DKLHSIHSG--ANALFLF 165
           K+G F+ L VR   LFDA    +  L+   +  D LHS+ +G   N++F F
Sbjct: 438 KAGTFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEF 488


>D16815-1|BAA20088.1|  579|Homo sapiens EAR-1r protein.
          Length = 579

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +1

Query: 25  KSGLFDALFVRLICLFDAPLTNIICLNATTF--DKLHSIHSG--ANALFLF 165
           K+G F+ L VR   LFDA    +  L+   +  D LHS+ +G   N++F F
Sbjct: 439 KAGTFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEF 489


>CR457434-1|CAG33715.1|  579|Homo sapiens NR1D2 protein.
          Length = 579

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +1

Query: 25  KSGLFDALFVRLICLFDAPLTNIICLNATTF--DKLHSIHSG--ANALFLF 165
           K+G F+ L VR   LFDA    +  L+   +  D LHS+ +G   N++F F
Sbjct: 439 KAGTFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEF 489


>BC045613-1|AAH45613.1|  579|Homo sapiens nuclear receptor subfamily
           1, group D, member 2 protein.
          Length = 579

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +1

Query: 25  KSGLFDALFVRLICLFDAPLTNIICLNATTF--DKLHSIHSG--ANALFLF 165
           K+G F+ L VR   LFDA    +  L+   +  D LHS+ +G   N++F F
Sbjct: 439 KAGTFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEF 489


>AB209091-1|BAD92328.1|  549|Homo sapiens Orphan nuclear receptor
           NR1D2 variant protein.
          Length = 549

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +1

Query: 25  KSGLFDALFVRLICLFDAPLTNIICLNATTF--DKLHSIHSG--ANALFLF 165
           K+G F+ L VR   LFDA    +  L+   +  D LHS+ +G   N++F F
Sbjct: 409 KAGTFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEF 459


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,964,087
Number of Sequences: 237096
Number of extensions: 1297928
Number of successful extensions: 2815
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2815
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3815180866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)