Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_H22
(456 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z67882-6|CAA91804.1| 406|Caenorhabditis elegans Hypothetical pr... 32 0.23
Z50797-10|CAA90677.1| 406|Caenorhabditis elegans Hypothetical p... 32 0.23
Z77662-16|CAJ90504.1| 424|Caenorhabditis elegans Hypothetical p... 29 2.1
AL033512-5|CAA22073.2| 424|Caenorhabditis elegans Hypothetical ... 29 2.1
U64836-7|AAG24061.1| 674|Caenorhabditis elegans Hypothetical pr... 28 2.8
AL137227-7|CAB70235.1| 787|Caenorhabditis elegans Hypothetical ... 28 2.8
AF022985-6|AAB69963.1| 457|Caenorhabditis elegans Hypothetical ... 28 3.7
U08022-1|AAA17722.1| 515|Caenorhabditis elegans STE12 transcrip... 27 4.9
AL110501-5|CAB54505.1| 552|Caenorhabditis elegans Hypothetical ... 27 4.9
AC006620-3|AAF39779.2| 579|Caenorhabditis elegans Hypothetical ... 27 4.9
Z73911-8|CAL64005.1| 367|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z73911-7|CAA98142.2| 483|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z81496-11|CAB04069.2| 448|Caenorhabditis elegans Hypothetical p... 27 8.6
AY204204-1|AAO39205.1| 448|Caenorhabditis elegans nuclear recep... 27 8.6
>Z67882-6|CAA91804.1| 406|Caenorhabditis elegans Hypothetical
protein F22E10.5 protein.
Length = 406
Score = 31.9 bits (69), Expect = 0.23
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = -2
Query: 227 QHRLPFNTNSWVQSKC*KM*WKRNSAFAPLWIECNLSKVVAL-RQIILVRGASNKQISRT 51
+H+ NSW+ C K W+ P+WI NL + L +I V S+ S T
Sbjct: 33 EHKYSAVDNSWLDELCMKRWWEFVITLCPMWIAPNLITWIGLVINLITVLVLSSFSYSAT 92
Query: 50 NNASNSPLLHRA 15
+A + L A
Sbjct: 93 ESAPSWAYLQAA 104
>Z50797-10|CAA90677.1| 406|Caenorhabditis elegans Hypothetical
protein F22E10.5 protein.
Length = 406
Score = 31.9 bits (69), Expect = 0.23
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = -2
Query: 227 QHRLPFNTNSWVQSKC*KM*WKRNSAFAPLWIECNLSKVVAL-RQIILVRGASNKQISRT 51
+H+ NSW+ C K W+ P+WI NL + L +I V S+ S T
Sbjct: 33 EHKYSAVDNSWLDELCMKRWWEFVITLCPMWIAPNLITWIGLVINLITVLVLSSFSYSAT 92
Query: 50 NNASNSPLLHRA 15
+A + L A
Sbjct: 93 ESAPSWAYLQAA 104
>Z77662-16|CAJ90504.1| 424|Caenorhabditis elegans Hypothetical
protein Y49A3A.1 protein.
Length = 424
Score = 28.7 bits (61), Expect = 2.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 200 SWVQSKC*KM*WKRNSAFAPLWIECNLSKVVAL 102
SW+ C K W+ + PLW+ NL ++ L
Sbjct: 72 SWLDELCMKKFWEAVVLYYPLWVAPNLLTLIGL 104
>AL033512-5|CAA22073.2| 424|Caenorhabditis elegans Hypothetical
protein Y49A3A.1 protein.
Length = 424
Score = 28.7 bits (61), Expect = 2.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 200 SWVQSKC*KM*WKRNSAFAPLWIECNLSKVVAL 102
SW+ C K W+ + PLW+ NL ++ L
Sbjct: 72 SWLDELCMKKFWEAVVLYYPLWVAPNLLTLIGL 104
>U64836-7|AAG24061.1| 674|Caenorhabditis elegans Hypothetical
protein F10G2.7 protein.
Length = 674
Score = 28.3 bits (60), Expect = 2.8
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = -3
Query: 424 VRESG*SVHRFPSRISGLCTGTVLSGRRFCKQPFRDVKALVPRSSILRRPGRFRCDEHDG 245
++ESG V F R S LCT F K + + +P + +L +P R G
Sbjct: 552 IKESGKEVSTFEMRSSQLCTDAFHWFTPFLK--CKPSRVHLPSTQVLHKPQRISSFSDSG 609
Query: 244 AEETDV 227
+T V
Sbjct: 610 LSDTPV 615
>AL137227-7|CAB70235.1| 787|Caenorhabditis elegans Hypothetical
protein F58D5.6 protein.
Length = 787
Score = 28.3 bits (60), Expect = 2.8
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +3
Query: 204 RIEWEPMLTSVSSAPSCSSQRNRPGLRNIELRGTNAFTSLKGCLQNRRPLKTVP-VHRPE 380
R W + + PS S+ + N FTSL C++ + LKT P +
Sbjct: 282 RETWTKLANDSPTIPSFSNTIEQSSKLNKYYEPEKLFTSLPKCVEKLKALKTQPDFDKLS 341
Query: 381 ILDGNRWTLYPDSRTL 428
I+D T + ++R L
Sbjct: 342 IIDSVVNTFHENAREL 357
>AF022985-6|AAB69963.1| 457|Caenorhabditis elegans Hypothetical
protein T15B7.7 protein.
Length = 457
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -1
Query: 204 EFMGSEQMLKDVMEEKQCIRATVDRVQFVKSCRIKTDYISERCI 73
+F + LKD+ +EKQ + ++F+ + + T S+ CI
Sbjct: 99 QFRNAHNYLKDLKDEKQVYEDSGRMIEFLHNWKCSTRNSSQNCI 142
>U08022-1|AAA17722.1| 515|Caenorhabditis elegans STE12
transcriptional activator protein.
Length = 515
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/64 (21%), Positives = 32/64 (50%)
Frame = -1
Query: 255 STMEQKRPMSASAPIQYEFMGSEQMLKDVMEEKQCIRATVDRVQFVKSCRIKTDYISERC 76
S+ RP+ QY M + Q + +MEE+ ++ + ++ ++ R++ Y ++
Sbjct: 117 SSTNLDRPLHPDEIEQYRMMEARQQFQQIMEERMYMQQMM-AMRMMRMRRLQAAYYQQQQ 175
Query: 75 IKQA 64
+K A
Sbjct: 176 MKMA 179
>AL110501-5|CAB54505.1| 552|Caenorhabditis elegans Hypothetical
protein Y79H2A.1a protein.
Length = 552
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/64 (21%), Positives = 32/64 (50%)
Frame = -1
Query: 255 STMEQKRPMSASAPIQYEFMGSEQMLKDVMEEKQCIRATVDRVQFVKSCRIKTDYISERC 76
S+ RP+ QY M + Q + +MEE+ ++ + ++ ++ R++ Y ++
Sbjct: 154 SSTNLDRPLHPDEIEQYRMMEARQQFQQIMEERMYMQQMM-AMRMMRMRRLQAAYYQQQQ 212
Query: 75 IKQA 64
+K A
Sbjct: 213 MKMA 216
>AC006620-3|AAF39779.2| 579|Caenorhabditis elegans Hypothetical
protein C51G7.4 protein.
Length = 579
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/64 (21%), Positives = 32/64 (50%)
Frame = -1
Query: 255 STMEQKRPMSASAPIQYEFMGSEQMLKDVMEEKQCIRATVDRVQFVKSCRIKTDYISERC 76
S+ RP+ QY M + Q + +MEE+ ++ + ++ ++ R++ Y ++
Sbjct: 181 SSTNLDRPLHPDEIEQYRMMEARQQFQQIMEERMYMQQMM-AMRMMRMRRLQAAYYQQQQ 239
Query: 75 IKQA 64
+K A
Sbjct: 240 MKMA 243
>Z73911-8|CAL64005.1| 367|Caenorhabditis elegans Hypothetical
protein T12A7.2b protein.
Length = 367
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 19 RCKSGLFDALFVRLICLFDAPLTNIICLNATTFDKLHSIHSG 144
RC SG+ + CLF P T C+N FD + + G
Sbjct: 135 RCNSGVVNKTSGLCECLFGRPCTIQKCINGHFFDGKCACYEG 176
>Z73911-7|CAA98142.2| 483|Caenorhabditis elegans Hypothetical
protein T12A7.2a protein.
Length = 483
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 19 RCKSGLFDALFVRLICLFDAPLTNIICLNATTFDKLHSIHSG 144
RC SG+ + CLF P T C+N FD + + G
Sbjct: 135 RCNSGVVNKTSGLCECLFGRPCTIQKCINGHFFDGKCACYEG 176
>Z81496-11|CAB04069.2| 448|Caenorhabditis elegans Hypothetical
protein F09C6.9 protein.
Length = 448
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 199 HGFRANVERCNGRETVHSRHC 137
HG+ NV CNG +T R C
Sbjct: 58 HGYHYNVASCNGCKTFFRRMC 78
>AY204204-1|AAO39205.1| 448|Caenorhabditis elegans nuclear receptor
NHR-116 protein.
Length = 448
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 199 HGFRANVERCNGRETVHSRHC 137
HG+ NV CNG +T R C
Sbjct: 58 HGYHYNVASCNGCKTFFRRMC 78
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,701,242
Number of Sequences: 27780
Number of extensions: 220568
Number of successful extensions: 568
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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