Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_H21
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1039 + 25610200-25610538,25611022-25611143,25611243-256113... 142 2e-34
10_06_0102 + 10758601-10758948,10759051-10759257,10759349-107595... 54 8e-08
05_03_0359 - 12929240-12929376,12931379-12933497,12933594-129337... 52 2e-07
01_05_0608 - 23628100-23631486 31 0.82
01_06_0102 - 26447286-26448107,26448248-26448385,26448990-264493... 28 4.4
11_08_0026 + 27752519-27755441,27755538-27755923 28 5.8
12_02_0546 - 20289272-20289470,20290054-20290223 27 7.7
09_06_0176 + 21351884-21352693,21352821-21352976,21353425-213536... 27 7.7
>12_02_1039 +
25610200-25610538,25611022-25611143,25611243-25611390,
25611681-25611818,25612106-25612165,25612234-25612392,
25612714-25612912,25613156-25613260,25613339-25613475,
25613812-25614037,25614119-25614282,25614408-25614524,
25614622-25614864,25614959-25615054,25615270-25615287
Length = 756
Score = 142 bits (343), Expect = 2e-34
Identities = 65/109 (59%), Positives = 85/109 (77%)
Frame = +2
Query: 176 EEVGYQQIKKVLIANRGEIACRVMRTAKKLGIRTVAVYSDADKHAMHVEMADEAYHIGPA 355
E G ++KVL+ANRGEIACRVMRTA++LGI TVAVYSDAD+ A+HV ADEA +GP
Sbjct: 32 EAGGGGAVEKVLVANRGEIACRVMRTARRLGIPTVAVYSDADRGALHVRAADEAVRLGPP 91
Query: 356 PSTQSYLNAAKILDVAKKSNSQAIHPGYGFLSENVEFCERCANEDVIFI 502
P+ +SYLNA+ I+D A ++ ++AIHPGYGFLSE+ +F + C E + FI
Sbjct: 92 PARESYLNASAIVDAALRTGAKAIHPGYGFLSESADFAQLCKAEGLTFI 140
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +3
Query: 504 GPPPKAIRDMGIKSTSK 554
GPPP AIRDMG KS SK
Sbjct: 141 GPPPSAIRDMGDKSASK 157
>10_06_0102 +
10758601-10758948,10759051-10759257,10759349-10759507,
10759617-10759709,10759913-10760008,10760457-10760724,
10760805-10761047,10761298-10761422,10761499-10761615,
10761705-10761779,10761886-10761942,10762035-10762139,
10762244-10762330,10762790-10763047,10763075-10763263,
10763418-10763528,10763640-10763729,10763814-10763990,
10764075-10764152,10764412-10764726,10764819-10765162,
10765304-10765541,10765631-10765998,10766106-10766316,
10766622-10766801,10766886-10769045,10769151-10769207
Length = 2251
Score = 54.0 bits (124), Expect = 8e-08
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Frame = +2
Query: 185 GYQQIKKVLIANRGEIACRVMRTAKKLGIRT-----------VAVYSDADKHAMHVEMAD 331
G I VL+AN G A + MR+ + + T +A D +A H+ +AD
Sbjct: 35 GDSPIHSVLVANNGMAAVKFMRSIRTWALETFGTEKAILLVAMATPEDLKINAEHIRIAD 94
Query: 332 EAYHIGPAPSTQSYLNAAKILDVAKKSNSQAIHPGYGFLSENVEFCERCANEDVIFI 502
+ + + +Y N I+++A++++ A+ PG+G SEN E + + +IF+
Sbjct: 95 QFVEVPGGTNNNNYANVQLIVEIAERTHVSAVWPGWGHASENPELPDALKEKGIIFL 151
>05_03_0359 -
12929240-12929376,12931379-12933497,12933594-12933773,
12933905-12934118,12934199-12934551,12934642-12934864,
12934953-12935230,12935456-12935725,12935817-12935939,
12936025-12936102,12936351-12936527,12936597-12936686,
12937010-12937120,12937397-12937585,12937667-12937858,
12937990-12938076,12938153-12938257,12938340-12938396,
12938471-12938545,12938647-12938763,12938876-12939000,
12939082-12939121,12939241-12939291,12939382-12939569,
12939808-12939901,12939976-12940149,12940242-12940337,
12940597-12940689,12940794-12940955,12941034-12941240,
12941356-12941728,12942379-12942436,12943096-12943171,
12943874-12943941,12944321-12944642
Length = 2433
Score = 52.4 bits (120), Expect = 2e-07
Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 11/123 (8%)
Frame = +2
Query: 185 GYQQIKKVLIANRGEIACRVMRTAK---------KLGIRTVAVYSDADK--HAMHVEMAD 331
G I VL+AN G A + MR+ + + I+ +A+ + D +A H+ +AD
Sbjct: 218 GKTPIHSVLVANNGMAAAKFMRSVRTWANDTFGSEKAIQLIAMATPEDLRINAEHIRIAD 277
Query: 332 EAYHIGPAPSTQSYLNAAKILDVAKKSNSQAIHPGYGFLSENVEFCERCANEDVIFIWAT 511
+ + + +Y N I+++A+++ A+ PG+G SEN E + + ++F+
Sbjct: 278 QFVEVPGGTNNNNYANVQLIVEIAERTGVSAVWPGWGHASENPELPDALTAKGIVFLGPP 337
Query: 512 SKS 520
+ S
Sbjct: 338 ASS 340
>01_05_0608 - 23628100-23631486
Length = 1128
Score = 30.7 bits (66), Expect = 0.82
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +2
Query: 347 GPAPSTQSYLNAAKILDVAKKSNSQAIHPGYGFLS 451
GPAPS L +ILD++ S S + PG G LS
Sbjct: 539 GPAPSWVGALGNLQILDLSHNSFSGPVPPGIGSLS 573
>01_06_0102 -
26447286-26448107,26448248-26448385,26448990-26449359,
26449505-26449606,26449696-26449788,26449934-26450181,
26451088-26451274,26451825-26452043,26452464-26452660,
26453545-26453875,26454099-26454457,26455141-26455240,
26455349-26455464,26455547-26455663,26455782-26455880,
26456057-26456131,26456205-26456286,26457724-26457763,
26458685-26458769,26458924-26459055
Length = 1303
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +3
Query: 264 WA*EP*PYILMLTSTLCMLKWLMKPITLDQHRQPRVILML 383
WA E P LT LC L L+ P L QH++ RV M+
Sbjct: 249 WAIEH-PTYSALTRPLCELSSLVPPQVLTQHKKLRVYCMV 287
>11_08_0026 + 27752519-27755441,27755538-27755923
Length = 1102
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 338 YHIGPAPSTQSYLNAAKILDVAKKSNSQAIHPGYGFLSE 454
+ GP P++ S L +LD++ + + AI P YG L +
Sbjct: 336 FDAGPIPASLSNLTMLSVLDLSWSNLTGAIPPEYGQLGK 374
>12_02_0546 - 20289272-20289470,20290054-20290223
Length = 122
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 542 FNAHISNCFWRWPK*KLHLHWHTFHKILHFLI 447
FN + CF + +H H HT+ K+LH+ I
Sbjct: 51 FNPYPGPCFLYFMIKIIHPHMHTYAKLLHWKI 82
>09_06_0176 +
21351884-21352693,21352821-21352976,21353425-21353613,
21354741-21356354,21356446-21356553,21356649-21357509,
21357586-21357632,21358591-21358697,21359512-21359630,
21359706-21359915,21360412-21360693,21360820-21360952,
21361256-21361413,21362564-21362647,21362949-21363035
Length = 1654
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 191 QQIKKVLIANRGEIACRVMRTAKKLGIRTVAVYSDADKHAMHVEMADE 334
++ ++V +A R EI V + +RTV Y+D+D A V+ A E
Sbjct: 579 EKARRVALARRPEILSYVRNRSIPGDVRTVLDYADSDGVAKAVKPAKE 626
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,095,313
Number of Sequences: 37544
Number of extensions: 231513
Number of successful extensions: 450
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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