Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_H20
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    33   0.036
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    29   0.34 
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   2.4  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    25   7.2  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    25   7.2  

>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 32.7 bits (71), Expect = 0.036
 Identities = 17/33 (51%), Positives = 22/33 (66%)
 Frame = +2

Query: 215  VYLDVAFM*IRLSSDRFVLVCGNARDLVSSKRC 313
            VYLDV  M + LSSD+  L CG+A  +V S+ C
Sbjct: 1351 VYLDVGMMRV-LSSDQLPLQCGSATSVVVSEGC 1382


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 233 FM*IRLSSDRFVLVCGNARDLVSSKRCENVDNGVYDDSCVINIRNFK 373
           FM +RL+S     +     DL+SS +   VDNG+Y +  V  +   K
Sbjct: 206 FMLVRLASKGSFEIANGIMDLLSSSK---VDNGIYSEGLVFTLNREK 249


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 338 DDSCVINIRNFKLNNNCR 391
           D+ C++ + NF+LN+ CR
Sbjct: 522 DERCLVCLSNFELNDECR 539


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 308 RCENVDNGVYDDSCVINIRNFKLN 379
           R E +  G  DD C + IRN   N
Sbjct: 352 RAETLYEGPMDDECAVGIRNCDAN 375


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 308 RCENVDNGVYDDSCVINIRNFKLN 379
           R E +  G  DD C + IRN   N
Sbjct: 352 RAETLYEGPMDDECAVGIRNCDAN 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,897,825
Number of Sequences: 5004
Number of extensions: 35048
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)