Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_H19
(477 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 126 1e-29
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 125 2e-29
02_01_0295 - 1973115-1973404,1974138-1974663 29 1.9
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296... 28 3.4
05_03_0421 + 13768048-13768879,13769054-13769316,13775572-13775691 28 3.4
01_05_0754 + 24933860-24934031,24936035-24936104,24936192-249363... 28 4.5
03_05_0592 + 25952603-25952983,25953197-25953547 27 7.8
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 126 bits (303), Expect = 1e-29
Identities = 70/133 (52%), Positives = 84/133 (63%), Gaps = 2/133 (1%)
Frame = +3
Query: 9 VDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV--VK 182
V +LSV+ LVIV+KG ++PGLTD E PR GPKRASKIRKLFNL K+DDVR+YV +
Sbjct: 104 VSQDLSVINLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYR 163
Query: 183 RLLPAKEGKENAKPRYKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSAEADYAKLLAQ 362
R K GK+ + KAPKIQRLVTP+ LQ S A+Y KLLAQ
Sbjct: 164 RTFTTKNGKKVS----KAPKIQRLVTPLTLQRKRARIADKKKRIAKKKSEAAEYQKLLAQ 219
Query: 363 RKKESKVRRQEEI 401
R KE + RR E +
Sbjct: 220 RLKEQRERRSESL 232
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 125 bits (301), Expect = 2e-29
Identities = 70/133 (52%), Positives = 84/133 (63%), Gaps = 2/133 (1%)
Frame = +3
Query: 9 VDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV--VK 182
V +LSV+ LVIV+KG ++PGLTD E PR GPKRASKIRKLFNL K+DDVR+YV +
Sbjct: 104 VSQDLSVINLVIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYR 163
Query: 183 RLLPAKEGKENAKPRYKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSAEADYAKLLAQ 362
R K GK+ + KAPKIQRLVTP+ LQ S A+Y KLLAQ
Sbjct: 164 RTFTTKNGKKVS----KAPKIQRLVTPLTLQRKRARIAQKKQRIAKKKSEAAEYQKLLAQ 219
Query: 363 RKKESKVRRQEEI 401
R KE + RR E +
Sbjct: 220 RLKEQRERRSESL 232
>02_01_0295 - 1973115-1973404,1974138-1974663
Length = 271
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +3
Query: 54 GAQEIPGLT--DGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEG 206
GA PG ++P R+G + +KIRKL +K ++D++ ++K +P K G
Sbjct: 202 GAGTTPGRVYKGKKMPGRMGGTK-TKIRKLKIVKIDNDLKVVMIKGAVPGKPG 253
>10_07_0139 +
13327851-13327880,13327999-13329049,13329089-13329648,
13329757-13329904,13330935-13331024,13331148-13331208,
13331301-13331450,13331571-13331629,13332148-13332282,
13333028-13333119,13333210-13333278
Length = 814
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/53 (24%), Positives = 31/53 (58%)
Frame = +3
Query: 99 RLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPKIQRLV 257
++ PK+A ++ + +DD+ R V + +P+++ + A+ ++PK +R V
Sbjct: 325 KVEPKKAHCSDRISHKTTQDDMERKVPSKYIPSEKKGKTAESCSRSPKRERRV 377
>05_03_0421 + 13768048-13768879,13769054-13769316,13775572-13775691
Length = 404
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 75 LTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPA 197
+ D E P+ + + + K+ L ED +VVKRLL A
Sbjct: 165 MDDKETPQEMYDRMMILVNKIKGLGSEDMTNHFVVKRLLRA 205
>01_05_0754 +
24933860-24934031,24936035-24936104,24936192-24936316,
24936539-24936677,24936926-24937022,24937105-24937170,
24937478-24937616,24938149-24938258,24938355-24938459,
24938579-24938686
Length = 376
Score = 27.9 bits (59), Expect = 4.5
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Frame = +3
Query: 84 GEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPKI--QRLV 257
GE P P+ SKI + + + V RL A++ + K PK Q+++
Sbjct: 210 GEEPYHFQPRLFSKI--IPEKSRYQVLSTKVEIRLAKAEQITWTSLDYDKKPKAVPQKII 267
Query: 258 TPVVLQXXXXXXXXXXXXXXXXXSAEADYAKLLAQRKKESKVRRQE 395
PV+L ++ D+ KL A+ KKE K + E
Sbjct: 268 PPVLLIALLLSAESAQRPSYPSSKSKKDWDKLEAEVKKEEKEEKLE 313
>03_05_0592 + 25952603-25952983,25953197-25953547
Length = 243
Score = 27.1 bits (57), Expect = 7.8
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 42 IVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR 185
+V + E+PGL E + R+ + + +KE +RRY+V+R
Sbjct: 157 VVARVFDELPGLERLEAVTDVENVRSQRALEKAGFRKEGVLRRYIVRR 204
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,939,305
Number of Sequences: 37544
Number of extensions: 196429
Number of successful extensions: 385
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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