Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_H19
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   101   4e-22
U00058-2|AAL02528.2|  832|Caenorhabditis elegans Hypothetical pr...    30   0.99 
Z77652-11|CAI70405.1|  310|Caenorhabditis elegans Hypothetical p...    28   4.0  
AC024758-3|AAF59456.3| 1037|Caenorhabditis elegans Hypothetical ...    27   7.0  
U00047-13|AAY43978.1|  301|Caenorhabditis elegans Hypothetical p...    27   9.2  
AF003139-10|AAB54160.3|  294|Caenorhabditis elegans Hypothetical...    27   9.2  
AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical ...    27   9.2  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  101 bits (241), Expect = 4e-22
 Identities = 59/122 (48%), Positives = 71/122 (58%)
 Frame = +3

Query: 9   VDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRL 188
           VDAN+S L+LVIV+KG  EI GLTD  +PR+LGPKRASKIRKLFNL K DDV +YV+   
Sbjct: 102 VDANMSALSLVIVKKGDGEIEGLTDSVLPRKLGPKRASKIRKLFNLTKHDDVTKYVITHD 161

Query: 189 LPAKEGKENAKPRYKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSAEADYAKLLAQRK 368
               +G      +  APKIQRL+TP  +                     A Y KLLA+  
Sbjct: 162 KTFPDG----VTKTIAPKIQRLITPARIARKKYLLRQKRNQKIKMRDDAAAYHKLLAKYS 217

Query: 369 KE 374
           KE
Sbjct: 218 KE 219


>U00058-2|AAL02528.2|  832|Caenorhabditis elegans Hypothetical
           protein W03A5.1 protein.
          Length = 832

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 153 EDDVRRYVVKRLLPAKEGKENAKPRYKAPKIQRL 254
           +DD RRY  K L    +   N KPRYK  K   +
Sbjct: 276 DDDGRRYFCKLLKQIAQKTANPKPRYKLSKCSHI 309


>Z77652-11|CAI70405.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.13 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +1

Query: 190 YLPKRARKMQNPDTRRLKSR 249
           YL KR +KM+NP  ++L++R
Sbjct: 190 YLSKRRKKMENPAMKKLRTR 209


>AC024758-3|AAF59456.3| 1037|Caenorhabditis elegans Hypothetical
            protein Y37E11AM.1 protein.
          Length = 1037

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +3

Query: 132  KLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPKIQRLVT 260
            KL  LKK++  +    ++LL  ++ KE+ +   K PK++ L T
Sbjct: 992  KLKELKKKEIPKESYYEKLLKRQKAKEDDEKTEKKPKLEPLDT 1034


>U00047-13|AAY43978.1|  301|Caenorhabditis elegans Hypothetical
          protein ZK418.11 protein.
          Length = 301

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 20 PFSLSPGHCPQRC 58
          P S +PG CPQRC
Sbjct: 13 PKSCNPGECPQRC 25


>AF003139-10|AAB54160.3|  294|Caenorhabditis elegans Hypothetical
           protein F53G12.4 protein.
          Length = 294

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = +3

Query: 180 KRLLPAKEGKENAKPRYKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSAEADYA 347
           K +LP ++ KE AK     PK Q LV P+VL                  S  +DY+
Sbjct: 243 KSILPMEKKKEEAK-----PKEQELVEPLVLSEGESIDELEDFDTGLLSSGGSDYS 293


>AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical
            protein Y48G1C.5 protein.
          Length = 1161

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 30   LALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVV 179
            L L   +K  QE+        P  +GPK A +IR L  L  + +   +VV
Sbjct: 1010 LLLTFGKKRTQEVTHYQYTGWPEHMGPKDAEEIRYLLKLVTDSERPVFVV 1059


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,077,976
Number of Sequences: 27780
Number of extensions: 161048
Number of successful extensions: 437
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)