Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_H16
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    87   3e-18
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    28   1.3  
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|...    26   3.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   5.1  
SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Ma...    25   6.7  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   8.8  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   8.8  

>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 86.6 bits (205), Expect = 3e-18
 Identities = 49/173 (28%), Positives = 88/173 (50%), Gaps = 1/173 (0%)
 Frame = +1

Query: 88  MAPPYYADLGKKANDVFSKGYHLGVFKLDLKTKSESGVEFTSGITSNQES-GKVFGSLSS 264
           MAPP YA + K  ND+  + + +G   L ++T + +GV F   ++ NQ++ G + G L +
Sbjct: 1   MAPPAYAAINKLCNDLLQRDFPVGATLLSVRTTAPNGVVFN--VSGNQDAKGVISGKLET 58

Query: 265 KYAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGSKTGKLKTSFTN 444
            +  K  GLT ++ W T N L + + + ++ A GL + +  TF+P T +KT  L     +
Sbjct: 59  SFNDKANGLTISQGWTTANVLESKVGLSEQFAPGLHLNVNTTFSPATAAKTAILNLEHQH 118

Query: 445 DTVAVNTNLDLDLAGPVVDVAGVLNYHGWLAGVHTQFDSQKAKFSKNNFALGY 603
             +  + +++      + D    + + G+LAG    +D QK   S     +GY
Sbjct: 119 PLIHTHASVNALERKFLGDF--TVGHEGFLAGAEFGYDVQKGNVSNYAATIGY 169


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 2/112 (1%)
 Frame = +1

Query: 175 LKTKSESGVEFTSGITSNQESGKVFGSLSSKYAVKDYGLTFTEKWNTDNTLATDITIQDK 354
           L  ++    +  SG +  +    V   +     + + G       ++DN     I +   
Sbjct: 173 LSIEAGRNAQVESGFSLGESFAHVGNDMQFHLPISNSGAATPRSVHSDNQSQISIEVGRD 232

Query: 355 IAAGLKVTLEGTFAPQTGSKTGKLKTSFTNDTVAV--NTNLDLDLAGPVVDV 504
             A     L G   PQ         T F+  ++     T+LD +L  PV D+
Sbjct: 233 APAAAATDLSGIIGPQMTKSPASSVTHFSTPSMLPIGGTSLDDELLAPVDDL 284


>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 287

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 184 KSESGVEFTSGITSNQESGKVFGSLSSKYAVKDYGLTFTEKWNTDNTLAT 333
           +S SG    S + S   +  V  +L S   +K + LTF  +W   + +AT
Sbjct: 176 RSRSGHTLMSQLKSKGRN--VMATLFSPLFIKAFALTFVSEWGDRSQIAT 223


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = +1

Query: 373  VTLEGTFAPQTGSKTGKLKTSFTNDTVAVNTNLDL 477
            V++E    P+  + +G+++T+F  DT+ +   L++
Sbjct: 3557 VSIEPLLKPEFFTGSGEVQTTFAKDTITITLPLNI 3591


>SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 537 GEPAMVIEYTSHIDYWS 487
           G+P  VI + SH+D W+
Sbjct: 190 GQPISVIHFDSHLDTWA 206


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 223  SNQESGKVFGSLSSKYAVKDYGLTFTEKWNTDNT 324
            SNQ   K+  +L+ +   K +   +  K   DNT
Sbjct: 1160 SNQSKDKIIAALAKRNVYKSFAGLYDSKGKNDNT 1193


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 537 RSPHAV*FTEGKVLKEQLCSWLP 605
           R PH   FT   ++    CSWLP
Sbjct: 146 RYPHV--FTNNSIIPYSTCSWLP 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,592,371
Number of Sequences: 5004
Number of extensions: 52460
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)