Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_H16
(620 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055... 80 2e-15
03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,205... 54 7e-08
05_06_0213 + 26414613-26414695,26416907-26417077,26417983-264182... 40 0.002
03_02_0058 - 5316112-5316418,5316497-5316705,5316773-5316859,531... 39 0.003
01_06_0491 - 29763738-29764044,29764266-29764474,29764565-297646... 34 0.10
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522... 31 0.56
09_03_0118 - 12492206-12492415,12492746-12492816,12493611-124936... 31 0.74
10_08_1050 - 22559518-22559613,22559736-22559846,22559966-225600... 29 3.0
03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852... 29 3.0
07_03_1642 - 28319790-28321445 29 3.9
09_04_0427 - 17458974-17459129,17459227-17459335,17459753-174598... 27 9.1
09_02_0010 - 2940063-2940688,2940825-2941746,2941752-2941964 27 9.1
05_02_0149 + 7107830-7108095,7109115-7109229,7109917-7110117 27 9.1
>01_05_0521 -
22904656-22904962,22905132-22905340,22905432-22905521,
22905624-22905734,22906401-22906468,22906611-22906653
Length = 275
Score = 79.8 bits (188), Expect = 2e-15
Identities = 55/176 (31%), Positives = 89/176 (50%)
Frame = +1
Query: 88 MAPPYYADLGKKANDVFSKGYHLGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSK 267
MAP Y D+GKK D+ + Y K L T + GV T+ T ES VFG L ++
Sbjct: 1 MAPGLYTDIGKKTRDLLYRDYGTH-HKFTLTTCTPEGVTITAAGTRKNES--VFGELQTQ 57
Query: 268 YAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGSKTGKLKTSFTND 447
+K+ LT K N+++ L T +T+ + GLK L Q ++GKL+ + ++
Sbjct: 58 --LKNKKLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQ---RSGKLELQYLHE 112
Query: 448 TVAVNTNLDLDLAGPVVDVAGVLNYHGWLAGVHTQFDSQKAKFSKNNFALGYQTND 615
+N ++ L+ + P+V+++GV GV FD+ + F+K N AL +D
Sbjct: 113 YAGINASVGLN-SNPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNAALSLTNSD 167
>03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,
2053164-2053250,2053476-2053684,2054115-2054340,
2054473-2054510,2054657-2054714,2055363-2055662,
2055832-2055903,2055988-2056112,2056240-2056312,
2056417-2056521
Length = 1218
Score = 54.4 bits (125), Expect = 7e-08
Identities = 43/163 (26%), Positives = 78/163 (47%)
Frame = +1
Query: 130 DVFSKGYHLGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKYAVKDYGLTFTEKW 309
D+ K Y+ K L T S SG+ T+ T + G + +++ K T K
Sbjct: 729 DLLYKDYNFDQ-KFSLTTTSNSGLGLTA--TGVKIDELFIGDIQTQH--KSGKTTVDVKI 783
Query: 310 NTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGSKTGKLKTSFTNDTVAVNTNLDLDLAG 489
++++ ++T +T+ D+ GLK + Q K+GKL + +D A+N+ + L +
Sbjct: 784 DSESRVSTTVTV-DEALTGLKTSFSFRVPDQ---KSGKLDLQYLHDHFALNSTIGLT-ST 838
Query: 490 PVVDVAGVLNYHGWLAGVHTQFDSQKAKFSKNNFALGYQTNDF 618
P++++A + + AG FDS A +K N + Y +DF
Sbjct: 839 PLIELAATIGTNELSAGAEVGFDSTSASVTKYNSGICYNKHDF 881
>05_06_0213 +
26414613-26414695,26416907-26417077,26417983-26418219,
26418543-26418572,26419248-26419282,26421680-26421747,
26423067-26423126,26423310-26423399,26423487-26423695,
26424083-26424383
Length = 427
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/97 (28%), Positives = 42/97 (43%)
Frame = +1
Query: 325 LATDITIQDKIAAGLKVTLEGTFAPQTGSKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDV 504
L T T+ D GLK L F Q K+ K + + + +N + L+ A P+V
Sbjct: 229 LITTFTVHDLGTPGLKGILSIPFPYQ---KSAKAEVQYLHPHAGLNAIVGLN-ANPLVSF 284
Query: 505 AGVLNYHGWLAGVHTQFDSQKAKFSKNNFALGYQTND 615
+GV + G FD+ F+K N L + T D
Sbjct: 285 SGVFGTGAFAVGTDVAFDTATGDFTKYNAGLSHTTPD 321
>03_02_0058 -
5316112-5316418,5316497-5316705,5316773-5316859,
5316945-5317055,5317536-5317643,5319082-5319149,
5319269-5319320
Length = 313
Score = 39.1 bits (87), Expect = 0.003
Identities = 37/161 (22%), Positives = 70/161 (43%), Gaps = 1/161 (0%)
Frame = +1
Query: 139 SKGYHLGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKYAVKDYGLTFTE-KWNT 315
S ++ V K + G + T+ ++ G +SS Y K T + K +T
Sbjct: 54 SSSFYFQVIKAVKNISMQIGGDRGLTSTAVKKGGLYTLDVSSVYKYKS---TLVDVKVDT 110
Query: 316 DNTLATDITIQDKIAAGLKVTLEGTFAPQTGSKTGKLKTSFTNDTVAVNTNLDLDLAGPV 495
++ ++T +T+ D + + VT P S GK++ + ++ + T + + PV
Sbjct: 111 ESNISTTLTVFDVLPSTKLVT--SVKLPDYNS--GKVEMQYFHENASFATAVGMK-PSPV 165
Query: 496 VDVAGVLNYHGWLAGVHTQFDSQKAKFSKNNFALGYQTNDF 618
V+ +G G G FD+ KF+K + A+G D+
Sbjct: 166 VEFSGTAGAQGLAFGAEAGFDTATGKFTKYSAAIGVTKPDY 206
>01_06_0491 -
29763738-29764044,29764266-29764474,29764565-29764654,
29764819-29764905,29765598-29765733,29766036-29766186,
29766334-29766502
Length = 382
Score = 33.9 bits (74), Expect = 0.10
Identities = 24/95 (25%), Positives = 42/95 (44%)
Frame = +1
Query: 331 TDITIQDKIAAGLKVTLEGTFAPQTGSKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAG 510
T IT +D +GLK + F QT GK + + +D ++ + L + P+V+++G
Sbjct: 184 TTITTEDLGVSGLKQIVSLPFPYQTA---GKAELQYLHDYAGISLGVGLT-SKPLVNLSG 239
Query: 511 VLNYHGWLAGVHTQFDSQKAKFSKNNFALGYQTND 615
V G D+ F+K + L +D
Sbjct: 240 VFGNKSVAVGADVAVDTSTGDFTKYDAGLTINNSD 274
>12_02_1123 -
26250300-26250362,26251988-26252042,26252128-26252224,
26252364-26253048,26253354-26253721,26253931-26254074,
26254925-26255276
Length = 587
Score = 31.5 bits (68), Expect = 0.56
Identities = 23/76 (30%), Positives = 37/76 (48%)
Frame = +1
Query: 97 PYYADLGKKANDVFSKGYHLGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKYAV 276
P Y G + D+ SK +HL + + + G++F SG+ S + V L+ + A+
Sbjct: 261 PQYVH-GTQLPDLESKFFHLDLMHPSVY---KVGLQFLSGVISGGNACCVAMLLAFREAI 316
Query: 277 KDYGLTFTEKWNTDNT 324
KDY T+ N D T
Sbjct: 317 KDYSTPSTKTLNRDLT 332
>09_03_0118 -
12492206-12492415,12492746-12492816,12493611-12493634,
12494061-12494114,12494803-12496345
Length = 633
Score = 31.1 bits (67), Expect = 0.74
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = -1
Query: 218 IPLVNSTPDSLLVFKSSLNTPR**PLLKTSLAFFPRSA*YGGAMPEVY 75
+P + PDSLLV +SL R PLL++ L+ P SA G P ++
Sbjct: 115 LPGFSHHPDSLLVLANSLAGARLFPLLRSLLSDLPPSALSRGLFPLLF 162
>10_08_1050 -
22559518-22559613,22559736-22559846,22559966-22560034,
22560172-22560327,22560416-22560458,22560566-22560661,
22561136-22561249,22561390-22561574
Length = 289
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +1
Query: 103 YADLGKKANDVFSKGYHLGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKYAVKD 282
YAD ANDV+ +G FK +T S + I + V +L+ Y KD
Sbjct: 133 YADTSGAANDVYEFVKKIGKFKETKRTDGVSTSDLIMRILKDYNQ-YVMRNLARGYTRKD 191
Query: 283 YGLTFTEK 306
G+++ ++
Sbjct: 192 LGVSYVKE 199
>03_02_0651 +
10183050-10184167,10184350-10184974,10185023-10185208,
10185325-10185660
Length = 754
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 581 FENFAFCESNCVWTPASQPW*LSTPATSTTGPARSKSK 468
FENF +C+ ++P L PAT+ T P SK+K
Sbjct: 465 FENFVAIVQSCMGKQNTEPA-LEKPATAVTSPNDSKTK 501
>07_03_1642 - 28319790-28321445
Length = 551
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 559 NQTACGLRRASHGN*VHQPHRLLVQRGPSPN 467
N ACGLRRA+ + R+++++G PN
Sbjct: 357 NTLACGLRRANRMDEAKNLLRIMIEKGVRPN 387
>09_04_0427 -
17458974-17459129,17459227-17459335,17459753-17459862,
17459981-17460226,17460591-17460680,17461325-17461602,
17461814-17461942,17462007-17462418
Length = 509
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 226 NQESGKVFGSLSSKYAVKDYGLTFTEKW 309
N + + +++Y+VKD LT T KW
Sbjct: 422 NGDMDSICSLTATRYSVKDLNLTITHKW 449
>09_02_0010 - 2940063-2940688,2940825-2941746,2941752-2941964
Length = 586
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +1
Query: 232 ESGKVFGSLSSKYAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEG 387
+ G G+ S++ ++KD L F + TD L+ + + DKI + V L+G
Sbjct: 304 QGGNNNGNFSNQPSLKD--LVFAQAETTD-ALSKKLAVNDKILENINVKLDG 352
>05_02_0149 + 7107830-7108095,7109115-7109229,7109917-7110117
Length = 193
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 325 LATDITIQDKIAAGLKVTLEGTFAPQTGSKTGKLKTSFTNDTVAVNT 465
+A IT+ D A V L G+ P TGS + S +++++T
Sbjct: 13 IAGSITVHDLATAKWLVLLSGSSTPSTGSVHSVVSASLYKASMSIST 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,591,718
Number of Sequences: 37544
Number of extensions: 334012
Number of successful extensions: 853
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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