Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_H16
         (620 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical pr...   156   1e-38
Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr...    34   0.094
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ...    34   0.094
U40953-4|AAB52649.2|  421|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AL022270-2|CAB63433.2|  952|Caenorhabditis elegans Hypothetical ...    29   2.7  
AL021171-3|CAB54258.1|  749|Caenorhabditis elegans Hypothetical ...    29   2.7  
AL021171-2|CAA15957.1|  747|Caenorhabditis elegans Hypothetical ...    29   2.7  
AC024813-5|AAK27883.1|  255|Caenorhabditis elegans Hypothetical ...    29   3.5  
AC024813-4|AAK27882.1|  297|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z81554-1|CAB04506.1|  838|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AL023835-13|CAA19497.4|  304|Caenorhabditis elegans Hypothetical...    27   8.2  

>U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical
           protein R05G6.7 protein.
          Length = 283

 Score =  156 bits (378), Expect = 1e-38
 Identities = 75/179 (41%), Positives = 107/179 (59%), Gaps = 2/179 (1%)
 Frame = +1

Query: 88  MAPPYYADLGKKANDVFSKGYHLGVFKLDLKTKSESG--VEFTSGITSNQESGKVFGSLS 261
           MAPP +ADLGK A D+F+KGY+ G  K+D  T++     VEF S  + N  SGK+ G+L 
Sbjct: 1   MAPPTFADLGKSAKDLFNKGYNFGFLKIDSTTRAGDNKEVEFKSAASHNIGSGKLGGNLD 60

Query: 262 SKYAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGSKTGKLKTSFT 441
            KY +  YG+T TEKWNT+N L T I + ++   GLKVTL+  +AP  G ++GK+K  + 
Sbjct: 61  VKYKIPQYGITLTEKWNTENQLGTVIEVNEQFGRGLKVTLDSLYAPHAGKRSGKVKLDWA 120

Query: 442 NDTVAVNTNLDLDLAGPVVDVAGVLNYHGWLAGVHTQFDSQKAKFSKNNFALGYQTNDF 618
             T  V  ++ +  A PV++ AGV +  GWL G    FDS   K +  + A G+ T  +
Sbjct: 121 LPTARVTADVGVTSA-PVINAAGVFSRDGWLIGAAATFDSSSNKLAATSLAFGHSTPQY 178


>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical protein
            T08A11.1 protein.
          Length = 1872

 Score = 33.9 bits (74), Expect = 0.094
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +1

Query: 181  TKSESGVEFTSGITSNQESGKVFGSLSSKYAVKDYGLTFTEKWNTDNTLATD 336
            T+S  G         + +S    G+ S KY V  +G T  EKWN D  + TD
Sbjct: 1044 TRSRRGANMEDDRKHSSKSNSA-GNASKKYKVWAWGSTGEEKWNVDMEIGTD 1094


>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
            protein T08A11.1 protein.
          Length = 1872

 Score = 33.9 bits (74), Expect = 0.094
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +1

Query: 181  TKSESGVEFTSGITSNQESGKVFGSLSSKYAVKDYGLTFTEKWNTDNTLATD 336
            T+S  G         + +S    G+ S KY V  +G T  EKWN D  + TD
Sbjct: 1044 TRSRRGANMEDDRKHSSKSNSA-GNASKKYKVWAWGSTGEEKWNVDMEIGTD 1094


>U40953-4|AAB52649.2|  421|Caenorhabditis elegans Hypothetical
           protein F53B1.6 protein.
          Length = 421

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 451 VAVNTNLDLDLAGPVVDVAGVLNYHGWLAGVHTQFD 558
           + V+T+   D  G V D    L+YHGW +   T+F+
Sbjct: 281 IVVSTHGHPDHVGGVHDFPDALHYHGWYSHQRTKFN 316


>AL022270-2|CAB63433.2|  952|Caenorhabditis elegans Hypothetical
           protein C26G2.2 protein.
          Length = 952

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +1

Query: 283 YGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGSKTGKLKTSFTND-TVAV 459
           Y  TFT  W+T++T+ T    QD   + +  T E T A  +      + T  T + T +V
Sbjct: 460 YPSTFTSSWSTESTVLT-TQQQDTTTSVILETTEATDAASSSLSPDDVSTQLTTEATTSV 518

Query: 460 NTNLDLD 480
            +++  D
Sbjct: 519 VSSVPPD 525


>AL021171-3|CAB54258.1|  749|Caenorhabditis elegans Hypothetical
           protein H04D03.2b protein.
          Length = 749

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = +1

Query: 370 KVTLEGTFAPQTGSK-TGKLKTSFTNDTVAVNTNLDLDLAGPVV----DVAGVLNY 522
           K  +   F P    K  GKL TSF+ND        D++   PV+    D++GVL++
Sbjct: 344 KPEIRKKFEPMQKLKHAGKLDTSFSNDENRAAAGCDIEEDPPVIEKPTDLSGVLDF 399


>AL021171-2|CAA15957.1|  747|Caenorhabditis elegans Hypothetical
           protein H04D03.2a protein.
          Length = 747

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = +1

Query: 370 KVTLEGTFAPQTGSK-TGKLKTSFTNDTVAVNTNLDLDLAGPVV----DVAGVLNY 522
           K  +   F P    K  GKL TSF+ND        D++   PV+    D++GVL++
Sbjct: 344 KPEIRKKFEPMQKLKHAGKLDTSFSNDENRAAAGCDIEEDPPVIEKPTDLSGVLDF 399


>AC024813-5|AAK27883.1|  255|Caenorhabditis elegans Hypothetical
           protein Y54F10AL.1b protein.
          Length = 255

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 199 VEFTSGITSNQESGKVFGSLSSKYAVKDYGLTFTEKWNTDNTLATDI 339
           +E   G+ S  E+ K+F   +S+  ++ + LTF  +W   + L T I
Sbjct: 184 LEGGGGVASQSETRKIF-LFTSRIFIEAFSLTFVAEWGDRSQLTTII 229


>AC024813-4|AAK27882.1|  297|Caenorhabditis elegans Hypothetical
           protein Y54F10AL.1a protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 199 VEFTSGITSNQESGKVFGSLSSKYAVKDYGLTFTEKWNTDNTLATDI 339
           +E   G+ S  E+ K+F   +S+  ++ + LTF  +W   + L T I
Sbjct: 184 LEGGGGVASQSETRKIF-LFTSRIFIEAFSLTFVAEWGDRSQLTTII 229


>Z81554-1|CAB04506.1|  838|Caenorhabditis elegans Hypothetical
           protein F57G4.1 protein.
          Length = 838

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 244 VFGSLSSKYAVKDYGLTFTEKWNTDNTLATDI 339
           VFG LSS     DYG+T   K+ TD      I
Sbjct: 252 VFGELSSSKKTIDYGITKQWKYRTDGRFELSI 283


>AL023835-13|CAA19497.4|  304|Caenorhabditis elegans Hypothetical
           protein Y37A1B.15 protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 265 KYAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFA 396
           KY +K    TF+ KW   N L   +T+   + + L    +GTF+
Sbjct: 62  KYMIKTLSKTFSRKWEISNNLI--MTLLILLLSALFFISQGTFS 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,103,771
Number of Sequences: 27780
Number of extensions: 287348
Number of successful extensions: 701
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)