Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_H15
(540 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me... 28 1.0
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 27 1.8
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 27 1.8
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 2.3
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual 26 3.1
SPMIT.08 |||mitochondrial ribosomal small subunit|Schizosaccharo... 26 3.1
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 26 4.1
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation... 26 4.1
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 25 5.4
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 7.2
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos... 25 7.2
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p... 25 9.5
>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
membrane translocase Oxa102|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 27.9 bits (59), Expect = 1.0
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 373 MPMATRGLAVSKDQSREYMAVFPDIVRDLTETGKHTDVPEASKWLD 510
+P + V Q+ ++ F DIV + E GK+ P+AS+ LD
Sbjct: 320 LPEVPSAMPVPNAQNESFVKSFTDIVHGVQEKGKY---PQASEILD 362
>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
desaturase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 362
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -3
Query: 205 FLSCKFVGTCLSFSIVENIFETSSNISLCKILFQKIFCI 89
FL+ F+G + ++ I E S N+ K L+ + +C+
Sbjct: 91 FLTAYFIGAFCNQNLFLAIHELSHNLGFKKTLYNRAYCL 129
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 102 FWNKILHREIFEEVSKMFSTIEKL 173
F++ +L+RE E+ MFST+ K+
Sbjct: 232 FFDLVLYRESLEQCEDMFSTLSKI 255
>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 129 IFEEVSKMFSTIEKLRQVPTNL 194
I EEVS +F+T E++R++P L
Sbjct: 38 IDEEVSNIFATEERIRKIPNYL 59
>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 26.2 bits (55), Expect = 3.1
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 220 SKTTSVTNSDAMAPMLDQPTIKSPQNDETGSKKLLKLQKYHRFLSTLTPQEMPM 381
++ T+ T A P+ PT+++P N + + LL KY+ T+TP P+
Sbjct: 303 NQATASTLQLAPPPVQAIPTLRNPVNLDDKKESLL---KYYATHPTITPDGFPI 353
>SPMIT.08 |||mitochondrial ribosomal small
subunit|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 227
Score = 26.2 bits (55), Expect = 3.1
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Frame = -2
Query: 512 LSNHLLASGTSVCLPVSVRSLTMS---GKTAIYSRDWSLETAS-PRVA 381
LSNHLL S + V++R+L +S G + I+S+ ++ S P++A
Sbjct: 83 LSNHLLYSSKNYSFIVNIRALPISTPYGSSLIFSKYIAIIIGSNPKIA 130
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 25.8 bits (54), Expect = 4.1
Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 10/120 (8%)
Frame = +1
Query: 169 SLDKFLQIYKK---EIRRQISKTT-SVTNSDAMAPMLDQPTIKSPQNDETGSKKLLKLQK 336
SL K L++ ++ ++ +Q+ T S + ++ + SK+L +++
Sbjct: 684 SLHKALEVMRETSSDLDKQLKDATASQKELIVQTSSFQKELVEERERHNAISKRLQEIES 743
Query: 337 YHR----FLSTLTPQ--EMPMATRGLAVSKDQSREYMAVFPDIVRDLTETGKHTDVPEAS 498
+R ++ L Q + + A +DQ RE F + ++DLT + TD+ S
Sbjct: 744 LYRDRELLVTNLEDQLVDQTVTINKFAFERDQFRERSMGFENTIKDLTRKMEATDMLNVS 803
>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
specificity factor complex subunit
Pta1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +1
Query: 403 SKDQSREYMAVFPDIVRDLTETGKHTDVPEASKWLDKLLQY 525
++D + ++FP+IVR++ ++D+ KW+ L +
Sbjct: 16 ARDIVKTDQSLFPEIVRNILSVANYSDI-RYKKWMANFLWF 55
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 117 KFYSKKYFVLNKFLNGFKYRINATR*VD 34
+F+ K Y+ KFL G KY I+A VD
Sbjct: 1297 RFWKKGYW--KKFLRGLKYHISALYVVD 1322
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 26 ISRSTYLVAFIRYLKPFKNLFNTKYF 103
+S S L+ ++Y KPF + KYF
Sbjct: 273 VSLSDLLLIILKYDKPFVTQYKEKYF 298
>SPCC16C4.17 |mug123||meiotically upregulated gene
Mug123|Schizosaccharomyces pombe|chr 3|||Manual
Length = 235
Score = 25.0 bits (52), Expect = 7.2
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 193 YKKEIRRQISKTTSVTNSDAMAPMLDQPTIK-SPQNDETGSKKL 321
Y + +RR +K T ++ +AP+ P+IK S QN ++ SK L
Sbjct: 38 YVQSLRR--AKATVWSDIGRVAPLHSSPSIKSSSQNGKSSSKGL 79
>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 11 KT*QRISRSTYLVAFIRYLKPFKNLFNTKYFL 106
K+ I + L IRYLK K++ N Y++
Sbjct: 175 KSHSNIPKDIELACVIRYLKHLKSVPNVSYYI 206
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,473,136
Number of Sequences: 5004
Number of extensions: 53595
Number of successful extensions: 183
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -