Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_H15
(540 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1337 - 35780076-35780290,35780377-35780408,35780490-357805... 30 1.0
05_06_0265 - 26759960-26760088,26760315-26760386,26760457-267605... 30 1.4
05_01_0294 - 2291175-2291223,2291591-2292039,2292143-2292211,229... 29 3.1
08_02_1312 + 26055372-26056056,26056935-26057187,26057277-260580... 28 5.5
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 28 5.5
06_02_0196 - 12898050-12898553,12898689-12900824 27 7.2
04_04_1431 - 33551127-33551300,33551362-33551433,33551508-335515... 27 7.2
03_05_1124 + 30559633-30559674,30559781-30559890,30559973-305600... 27 7.2
07_03_0213 - 15244299-15246311 27 9.6
05_01_0366 - 2867953-2868252,2868329-2868469,2868808-2869089,286... 27 9.6
03_01_0142 + 1133064-1133999 27 9.6
>02_05_1337 -
35780076-35780290,35780377-35780408,35780490-35780584,
35780670-35780743,35780851-35780986,35781072-35781135,
35781333-35781395,35781514-35781656,35781752-35781889,
35781973-35782094,35782210-35782375,35782647-35782652,
35782988-35783059,35783241-35783348,35783719-35783848,
35783964-35784070,35784896-35785005,35785302-35785435,
35785528-35785982,35786068-35786595
Length = 965
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +1
Query: 220 SKTTSVTNSDAMAPMLDQPTIKSPQNDETGSKKLLKLQKYHRFLSTLTPQEMPMATRGL 396
S TT+ +S +AP L Q +++P+ E Q+ +T TP +P +++ +
Sbjct: 83 SSTTATASSSPLAPELRQAIMEAPRPSELAQPSPTPPQEQPVDAATTTPHHIPSSSKSI 141
>05_06_0265 -
26759960-26760088,26760315-26760386,26760457-26760546,
26760649-26760693,26760785-26760880,26760980-26761031,
26761209-26761297,26761388-26761504,26761680-26761737,
26761834-26761936,26762027-26762051,26762677-26762826
Length = 341
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +1
Query: 382 ATRGLAVSKDQSREYMAVFPDIVRDLTETGKHTDVPEASKWLDKLLQYNVPNG 540
A G V K++ E+ ++ + +L + +W+D++L YNVP G
Sbjct: 8 ACGGGGVDKEKE-EFKQIYGVLKEELLRDPAFEFTDSSRQWIDRMLDYNVPGG 59
>05_01_0294 -
2291175-2291223,2291591-2292039,2292143-2292211,
2292397-2292449,2292492-2294478
Length = 868
Score = 28.7 bits (61), Expect = 3.1
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +1
Query: 298 DETGSKKLLKLQKYHRFLS-TLTPQEMPMATRG---LAVSKDQSREYMAVFPDIVRDLTE 465
DE G K + K+ FL+ T + ATR LAV K+ REY+ FP+I++ L +
Sbjct: 434 DEAGEKLRKETSKHVHFLTNTGMILDHVQATRVISCLAVDKE-GREYIGKFPEIIKKLKD 492
>08_02_1312 +
26055372-26056056,26056935-26057187,26057277-26058081,
26058828-26058952,26059081-26059165,26059473-26059626,
26059724-26059761,26059842-26060109,26060257-26060380,
26060508-26060868,26061904-26062272,26062528-26062609,
26063042-26063193
Length = 1166
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 252 YGTNAGSTNHKITTER*DWIEETFKV-AKISQIPVDPDSPRNADGYPRTGRFQRPVPGVY 428
YG ++ DW++E ++ A++ V +P T +FQR +PG+
Sbjct: 745 YGITYDEARDMVSQRSFDWLKERDQLQAEMRAGKVFQGMREGLIRFPPTYKFQRHLPGLA 804
Query: 429 GCFPGHRER 455
G G ++R
Sbjct: 805 GYDSGEKKR 813
>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 72 HLRIYSIQNIFWNKILHREIFEEVSKMFSTIEKLRQVPTNLQERNS 209
H R+++ + + LH + EEV K+ ++KL + LQ RNS
Sbjct: 1045 HKRMHAEAALSMVENLHSKSQEEVGKLVMDLDKLENELSELQGRNS 1090
>06_02_0196 - 12898050-12898553,12898689-12900824
Length = 879
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 18 NKESVDQLISLHLYDT*NHLRIYSIQNIF 104
N E + QL+ L LYD + + IY +N F
Sbjct: 754 NLEGLQQLVKLQLYDAYDGMNIYFHENSF 782
>04_04_1431 -
33551127-33551300,33551362-33551433,33551508-33551597,
33551671-33551715,33551785-33551880,33552245-33552296,
33552412-33552500,33552590-33552887,33553007-33553109,
33553328-33553352,33553503-33553763
Length = 434
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 490 EASKWLDKLLQYNVPNG 540
EA +WL +++ YNVP G
Sbjct: 80 EARRWLAQMIDYNVPGG 96
>03_05_1124 + 30559633-30559674,30559781-30559890,30559973-30560030,
30560455-30560718,30560803-30560940,30561264-30561315,
30561525-30561604,30561929-30561988,30562084-30562164,
30562299-30562376,30563548-30563676,30563896-30564039,
30564145-30564290,30564402-30564558,30564657-30564715,
30564800-30564959,30565054-30565203,30565309-30565445,
30565531-30565677,30565995-30566052,30566417-30566518,
30566590-30566627,30566846-30566972,30567053-30567223,
30567313-30567444,30567575-30567681,30567815-30567875,
30567970-30568147,30568245-30568450,30568781-30568879,
30569021-30569236,30569333-30569472,30569559-30569660,
30569747-30569861,30570129-30570194,30570323-30570480,
30570594-30570690,30570931-30571137,30571435-30571505,
30571648-30571747,30571836-30571892,30571969-30572025,
30572108-30572188,30572319-30572401,30572504-30572651
Length = 1722
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +3
Query: 12 KHNKESVDQLISLHLYDT*NHLRIYSIQNIFWNKILHREIFEEVSKMFSTIEKLRQVPTN 191
+ NKE D+L++ R+ +Q + L REI E+ SK+ E + ++ TN
Sbjct: 1223 RQNKELEDELVTFRTKAEDLEKRLLEVQKE--SDELSREILEKDSKLNQLQEMIERLETN 1280
Query: 192 LQERNS 209
L S
Sbjct: 1281 LSSLES 1286
>07_03_0213 - 15244299-15246311
Length = 670
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +1
Query: 436 FPDIVRDLTETGKHTDVPEASKWLDKLLQYNVPNG 540
FP ++ L +H +W KL QYN+ G
Sbjct: 353 FPGVIAALLSLVRHLHPDSRGEWSGKLAQYNMIEG 387
>05_01_0366 -
2867953-2868252,2868329-2868469,2868808-2869089,
2869177-2869569,2869796-2869975,2870149-2871510
Length = 885
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 361 TPQEMPMATRGLAVSKDQSREYMAV 435
+PQ+ P + RGLA+S +SR AV
Sbjct: 50 SPQDTPASLRGLALSPPESRAAAAV 74
>03_01_0142 + 1133064-1133999
Length = 311
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 301 ETGSKKLLKLQKYHRFLSTLTPQEMPMATRGLAVSKDQSREY 426
E+G + L ++K H F +TP ++ R L + K + +Y
Sbjct: 22 ESGGRSLAAVEKEHMFDKVVTPSDVGKLNR-LVIPKQHAEKY 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,345,696
Number of Sequences: 37544
Number of extensions: 330958
Number of successful extensions: 944
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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