Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_H15
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68105-1|CAA92122.2|  195|Caenorhabditis elegans Hypothetical pr...    35   0.033
L23648-9|AAK95877.1|  466|Caenorhabditis elegans Prion-like-(q/n...    31   0.70 
Z92775-2|CAB07162.2|  382|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z92775-1|CAB07161.2|  379|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z66519-5|CAA91382.2|  500|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z54281-1|CAA91048.1|  121|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U21317-4|AAA62523.1|  719|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF003131-8|AAP68959.1| 1393|Caenorhabditis elegans Uncoordinated...    29   2.8  
AF003131-7|AAV34798.1| 1396|Caenorhabditis elegans Uncoordinated...    29   2.8  
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated...    29   2.8  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    29   2.8  
AL110485-17|CAB60365.1|  272|Caenorhabditis elegans Hypothetical...    28   3.7  
AL110485-16|CAB60364.1|  295|Caenorhabditis elegans Hypothetical...    28   3.7  
AC024857-3|AAK31568.6|  611|Caenorhabditis elegans Hypothetical ...    27   8.6  
AC006714-7|AAK29718.3|  612|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z68105-1|CAA92122.2|  195|Caenorhabditis elegans Hypothetical
           protein F13E6.1 protein.
          Length = 195

 Score = 35.1 bits (77), Expect = 0.033
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +1

Query: 196 KKEIRRQISKTTSVTNSDAMAPMLDQPTI--KSPQNDETGSKKLLKLQKYHRFLST 357
           KKE   + +K    ++SD  A +++QPT+  K PQND + S K++  Q     L T
Sbjct: 11  KKEELEKFAKELQGSDSDEDAVVIEQPTVEPKLPQNDSSSSNKIVLSQAEKDLLRT 66


>L23648-9|AAK95877.1|  466|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 38
           protein.
          Length = 466

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 16/65 (24%), Positives = 33/65 (50%)
 Frame = +1

Query: 235 VTNSDAMAPMLDQPTIKSPQNDETGSKKLLKLQKYHRFLSTLTPQEMPMATRGLAVSKDQ 414
           +T  D +  MLD   +K P ++E   ++    Q++   +S   P E  +  +G  +S++ 
Sbjct: 354 MTGEDYIELMLDDSELKKPMDEERQKRRAELEQRFAIVISKTPPVEGHIWYQGKWISEEL 413

Query: 415 SREYM 429
            ++YM
Sbjct: 414 HKKYM 418


>Z92775-2|CAB07162.2|  382|Caenorhabditis elegans Hypothetical
           protein C06H5.2 protein.
          Length = 382

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/39 (35%), Positives = 26/39 (66%)
 Frame = +1

Query: 262 MLDQPTIKSPQNDETGSKKLLKLQKYHRFLSTLTPQEMP 378
           +L+  TIKS ++DE   K+L++L+++ +   TLT   +P
Sbjct: 242 ILEDLTIKSSESDENSIKRLVRLEQWKQ-AKTLTLSPVP 279


>Z92775-1|CAB07161.2|  379|Caenorhabditis elegans Hypothetical
           protein C06H5.1 protein.
          Length = 379

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/39 (35%), Positives = 26/39 (66%)
 Frame = +1

Query: 262 MLDQPTIKSPQNDETGSKKLLKLQKYHRFLSTLTPQEMP 378
           +L+  TIKS ++DE   K+L++L+++ +   TLT   +P
Sbjct: 242 ILEDLTIKSSESDENSIKRLVRLEQWKQ-AKTLTLSPVP 279


>Z66519-5|CAA91382.2|  500|Caenorhabditis elegans Hypothetical
           protein B0334.5 protein.
          Length = 500

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
 Frame = +1

Query: 199 KEIRRQISKTTSVTN---SDAMAPMLDQPTIKSPQNDETGSKKLLKLQKYHRFLSTLTPQ 369
           + + R+ S  TS++    S   +P LD  +  +  ND+   K   +   +        P+
Sbjct: 137 RRLGRRFSGITSISARHFSTKSSPFLDTSSNNNISNDK--KKTPSRSPDFSNIPGARIPK 194

Query: 370 EMPMATRGLAVSKDQSREYMAVFPDIVR 453
            MP  TR L +SK Q+ E      ++VR
Sbjct: 195 SMPKRTRFLEISKQQADEAFRSCLEMVR 222


>Z54281-1|CAA91048.1|  121|Caenorhabditis elegans Hypothetical
           protein F46C5.1 protein.
          Length = 121

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
 Frame = +1

Query: 250 AMAPMLDQPTIKSPQNDETGSKKLLKLQ---KYHRFLSTLTPQEMP 378
           A APM+++P ++ P N E    K++K Q   K HR ++ ++ + MP
Sbjct: 21  AAAPMIEEPKLEKPTNLEILFAKIVKKQNESKQHRLINFIS-RAMP 65


>U21317-4|AAA62523.1|  719|Caenorhabditis elegans Hypothetical
           protein B0495.2 protein.
          Length = 719

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 409 DQSREYMAVFPDIVRDLTETGKHTDVPEASKWLDKLLQYN 528
           D+ ++     PD  +   +  KHTDVP  +K  D++L  N
Sbjct: 169 DRHKKSSTTSPDNDKSPHKKSKHTDVPADAKLFDRILDPN 208


>AF003131-8|AAP68959.1| 1393|Caenorhabditis elegans Uncoordinated
            protein 89, isoform c protein.
          Length = 1393

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 178  KFLQIYKKEIRRQISKTTSVTNSDAMAPMLDQPTIKSPQNDETGSK 315
            KFL      +RR+ S   S +    +A M+ QPT   P ++E  SK
Sbjct: 1345 KFLSSDPSMVRRRESIKYSASRLRKLAAMIRQPTFSQPISEELESK 1390


>AF003131-7|AAV34798.1| 1396|Caenorhabditis elegans Uncoordinated
            protein 89, isoform d protein.
          Length = 1396

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 178  KFLQIYKKEIRRQISKTTSVTNSDAMAPMLDQPTIKSPQNDETGSK 315
            KFL      +RR+ S   S +    +A M+ QPT   P ++E  SK
Sbjct: 1348 KFLSSDPSMVRRRESIKYSASRLRKLAAMIRQPTFSQPISEELESK 1393


>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
            protein 89, isoform f protein.
          Length = 7441

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 178  KFLQIYKKEIRRQISKTTSVTNSDAMAPMLDQPTIKSPQNDETGSK 315
            KFL      +RR+ S   S +    +A M+ QPT   P ++E  SK
Sbjct: 7393 KFLSSDPSMVRRRESIKYSASRLRKLAAMIRQPTFSQPISEELESK 7438


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
            protein 89, isoform b protein.
          Length = 8081

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 178  KFLQIYKKEIRRQISKTTSVTNSDAMAPMLDQPTIKSPQNDETGSK 315
            KFL      +RR+ S   S +    +A M+ QPT   P ++E  SK
Sbjct: 8033 KFLSSDPSMVRRRESIKYSASRLRKLAAMIRQPTFSQPISEELESK 8078


>AL110485-17|CAB60365.1|  272|Caenorhabditis elegans Hypothetical
           protein Y46G5A.22b protein.
          Length = 272

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 21/91 (23%), Positives = 33/91 (36%)
 Frame = +1

Query: 205 IRRQISKTTSVTNSDAMAPMLDQPTIKSPQNDETGSKKLLKLQKYHRFLSTLTPQEMPMA 384
           +R+  ++ +    S +   M   PT   P  D        K  K     +T T +E P  
Sbjct: 1   MRKSTTRRSHSEKSSSRGSMSSPPTRFYPSEDSESIYSTRKCSKRTTTTAT-TDEEKPNN 59

Query: 385 TRGLAVSKDQSREYMAVFPDIVRDLTETGKH 477
           +  +    D + EY   FP +   L    KH
Sbjct: 60  SYYIDDIYDSTEEYQVTFPTVELKLPRQRKH 90


>AL110485-16|CAB60364.1|  295|Caenorhabditis elegans Hypothetical
           protein Y46G5A.22a protein.
          Length = 295

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 21/91 (23%), Positives = 33/91 (36%)
 Frame = +1

Query: 205 IRRQISKTTSVTNSDAMAPMLDQPTIKSPQNDETGSKKLLKLQKYHRFLSTLTPQEMPMA 384
           +R+  ++ +    S +   M   PT   P  D        K  K     +T T +E P  
Sbjct: 1   MRKSTTRRSHSEKSSSRGSMSSPPTRFYPSEDSESIYSTRKCSKRTTTTAT-TDEEKPNN 59

Query: 385 TRGLAVSKDQSREYMAVFPDIVRDLTETGKH 477
           +  +    D + EY   FP +   L    KH
Sbjct: 60  SYYIDDIYDSTEEYQVTFPTVELKLPRQRKH 90


>AC024857-3|AAK31568.6|  611|Caenorhabditis elegans Hypothetical
           protein Y71G12A.2 protein.
          Length = 611

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 421 EY-MAVFPDIVRDLTETGKHTDVPEASKWLDKLLQYNV 531
           EY M++F D+ + L E    +  PE+ KWL +LL   +
Sbjct: 232 EYAMSIFDDLEKLLHEFVLRSGEPESPKWLAQLLNTKI 269


>AC006714-7|AAK29718.3|  612|Caenorhabditis elegans Hypothetical
           protein Y119D3B.11 protein.
          Length = 612

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 72  HLRIYSIQNIFWNKILHREIFEE 140
           H+ I S    FW KI H  IF+E
Sbjct: 358 HVEIQSDGGDFWTKIRHESIFQE 380


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,701,467
Number of Sequences: 27780
Number of extensions: 305998
Number of successful extensions: 1046
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)