Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_H13
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774... 93 2e-19
05_01_0064 + 454786-455646,456537-456752 31 0.74
03_05_0253 + 22416981-22416993,22417458-22417639,22417965-224181... 31 0.74
07_03_1347 + 25932185-25932748,25933151-25933755,25935797-259362... 30 1.3
03_05_0871 + 28396964-28399843 30 1.3
03_02_0205 + 6389343-6389609,6390418-6390486,6390662-6390757,639... 30 1.3
11_06_0291 + 22008412-22012284 29 3.0
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 29 3.0
07_03_0634 + 20125242-20125688 29 3.0
11_06_0289 - 21969248-21973516 29 3.9
11_06_0185 + 21018045-21022307 29 3.9
01_07_0339 + 42848065-42848943,42849308-42849526 28 5.2
01_06_0703 - 31326790-31326894,31327015-31327126,31327324-313274... 28 5.2
01_06_0807 + 32125987-32126029,32126030-32126208,32126760-321269... 28 6.9
11_04_0311 + 16232961-16233079,16235135-16237080,16237246-16237370 27 9.1
01_07_0280 + 42452993-42453337,42453778-42453981 27 9.1
01_06_0865 - 32567145-32568003,32568123-32568846,32569067-32569151 27 9.1
>11_04_0007 -
12074472-12074538,12074908-12075116,12077202-12077463,
12077547-12078043,12078651-12078719,12079258-12079363,
12080272-12080295,12081184-12081242,12081383-12081520
Length = 476
Score = 93.1 bits (221), Expect = 2e-19
Identities = 64/191 (33%), Positives = 96/191 (50%), Gaps = 3/191 (1%)
Frame = +2
Query: 38 LHNLSIAIYCMSQKVEKPVLSGQRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAY 217
L +L +++ C EKP L GQRIKTRKR+ DP F DA+VQ GDL+
Sbjct: 57 LSDLFVSLKCSK---EKPTLGGQRIKTRKRNIAAPLDPASFSDAIVQIYLDNAGDLELVA 113
Query: 218 KFLDSAGSKLDYRRYGEVIFDVLIAGGLLLPGGSVSMDGESPKTNTCIFSANEDMDTMRN 397
K ++S S L++ RYG+ F+V+ GG P G++ + E + + + +
Sbjct: 114 KSIES--SDLNFSRYGDTFFEVVFIGGRTQP-GTIKPEEEGERHPYSVLDCAAQREAILP 170
Query: 398 FEQVFVKLMRRYKYLEKMFEEEMKKVLVYLKGFEPQQRIKLARMTALWIG---NGCVPPS 568
K +RR +L K E M+K L L+ FE +R KLA TAL +G P +
Sbjct: 171 SVLYIQKTLRRRPFLIKNLENVMRKFLQSLEFFEENERKKLAIFTALAFSQKLSGLPPET 230
Query: 569 VLLVLVNEHLL 601
V L+ ++L+
Sbjct: 231 VFQPLLKDNLV 241
>05_01_0064 + 454786-455646,456537-456752
Length = 358
Score = 31.1 bits (67), Expect = 0.74
Identities = 19/83 (22%), Positives = 39/83 (46%)
Frame = +2
Query: 299 LLLPGGSVSMDGESPKTNTCIFSANEDMDTMRNFEQVFVKLMRRYKYLEKMFEEEMKKVL 478
L L GG+ G S + + + ED+ + ++F K + +Y+ FEE++++
Sbjct: 14 LCLCGGAACAAGRSGGEFSIVGYSEEDLASHDRLIELFEKWVAKYRKAYASFEEKVRRFE 73
Query: 479 VYLKGFEPQQRIKLARMTALWIG 547
V+ I ++T+ W+G
Sbjct: 74 VFKDNLNHIDDIN-KKVTSYWLG 95
>03_05_0253 +
22416981-22416993,22417458-22417639,22417965-22418148,
22418241-22418315,22418481-22418590,22419411-22419629,
22419713-22419868,22419996-22420232
Length = 391
Score = 31.1 bits (67), Expect = 0.74
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 392 RNFEQVFVKLMRRYKYLEKMFEEEMKKVLVYLKGFEPQQRIKLARMT 532
+ FE FV+ + +Y Y + E+ K ++++ F P I ++ MT
Sbjct: 195 KKFEDKFVQTLLKYGYKGEYMSEDWLKQPLFIQSFAPSSLIYMSNMT 241
>07_03_1347 +
25932185-25932748,25933151-25933755,25935797-25936214,
25936433-25936555,25936775-25936989,25937157-25937412,
25937844-25938149,25938764-25938820,25939635-25939685
Length = 864
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 131 EKEKYDPNGFRDALVQGLERAGGDLDAAYKFLDSAGSKLDYRRYGE-VIFD 280
EK+K DP GF D V A G ++ F S+G DY YGE V+FD
Sbjct: 62 EKDKDDPEGFYDHKVAA---ADGRMEGI--FWASSGLGWDYVYYGEVVVFD 107
>03_05_0871 + 28396964-28399843
Length = 959
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 464 MKKVLVYLKGFEPQQRIKLARMTALWIGNGCVP 562
MK +YL F+ + I ++++ LWIG+ +P
Sbjct: 437 MKLCFMYLGAFKEETEISVSKLIKLWIGDDFIP 469
>03_02_0205 +
6389343-6389609,6390418-6390486,6390662-6390757,
6391120-6391244,6391331-6391483,6392863-6392992,
6393122-6393282,6393660-6393702,6393869-6394042,
6394471-6394525,6394567-6394746,6396234-6396339,
6396448-6396506,6397419-6397541,6397825-6397919
Length = 611
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 104 QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKFLDSAGSKLDYRRYGE 268
Q +KT R KY P+ +D G E ++ AAY+ L + Y R+GE
Sbjct: 77 QEVKTAYRTLARKYHPDMNKDP---GAEEKFKEISAAYEILSDEEKRSLYDRFGE 128
>11_06_0291 + 22008412-22012284
Length = 1290
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +2
Query: 383 DTMRNFEQVFVKLMRRYKYLEKMFEEEMKKVLVYLKGFEPQQRIKLARMTALWIGNG 553
D+ ++F+ + K M Y Y + +E K L+YL F Q+I+ + + W+ G
Sbjct: 794 DSQKSFDAI-AKNMLMYSYND--LPKEYKSCLLYLAIFPKGQKIRRSTLIGRWVTEG 847
>08_01_0321 +
2872609-2873027,2873477-2873905,2874743-2874944,
2875909-2875947,2876309-2876354,2877380-2877922,
2878827-2880847,2880972-2881215,2881642-2881684,
2881923-2881962,2883580-2883675,2883712-2883759,
2883964-2884290
Length = 1498
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +2
Query: 395 NFEQVFVKLMRRYKYLEKMFEEEMKKVLVYLKGFEPQQRIKLARMTALWIGNGCVP 562
N+E K + + Y + +K L+YL F +I + +WI G VP
Sbjct: 676 NYEMANTKRILSFSYYD--LPSHLKNCLLYLSMFPEDYKIDKNHLIWIWIAEGFVP 729
>07_03_0634 + 20125242-20125688
Length = 148
Score = 29.1 bits (62), Expect = 3.0
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +3
Query: 117 PEKEMRKRSMTLTGSATPLSR---VWSARAVISTRLTNS*IRLARNSTTGAMARSYSMCL 287
P + + R+M S LS V S RAV S T S + T + +S+ L
Sbjct: 24 PRRRVHWRNMRCANSVAYLSLSAFVMSGRAVASAAATAS-PPVGVQLTVTSEHSEWSI-L 81
Query: 288 SPAVSCCPVGRCRWTG 335
SP +C P G+ +W G
Sbjct: 82 SPRKTCHPTGKVKWKG 97
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 392 RNFEQVFVKLMRRYKYLEKMFEEEMKKVLVYLKGFEPQQRIKLARMTALWIGNG 553
++F+ + K M Y Y + +E K L+YL F Q+I+ + + A W+ G
Sbjct: 809 KSFDTI-AKKMFMYSYND--LPKEYKSCLLYLAIFPKGQKIRRSTLIARWVAEG 859
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 392 RNFEQVFVKLMRRYKYLEKMFEEEMKKVLVYLKGFEPQQRIKLARMTALWIGNG 553
++F+ + K M Y Y + +E K L+YL F Q+I+ + + A W+ G
Sbjct: 807 KSFDTI-AKKMFMYSYND--LPKEYKSCLLYLAIFPKGQKIRRSTLIARWVAEG 857
>01_07_0339 + 42848065-42848943,42849308-42849526
Length = 365
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/83 (20%), Positives = 36/83 (43%)
Frame = +2
Query: 299 LLLPGGSVSMDGESPKTNTCIFSANEDMDTMRNFEQVFVKLMRRYKYLEKMFEEEMKKVL 478
LLL G + P + + + ED+ + ++F K M +Y+ EE++++
Sbjct: 15 LLLLCGGACVAVAMPSELSIVGYSEEDLASHERLMELFEKFMAKYRKAYSSLEEKLRRFE 74
Query: 479 VYLKGFEPQQRIKLARMTALWIG 547
V+ + ++T W+G
Sbjct: 75 VFKDNLNHIDE-ENKKITGYWLG 96
>01_06_0703 -
31326790-31326894,31327015-31327126,31327324-31327445,
31327573-31327658,31327783-31327901,31327991-31328053,
31328142-31328221,31328801-31328921,31329040-31329125,
31329318-31329413,31329510-31329584,31329869-31330210
Length = 468
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = -2
Query: 509 VAVARNLLNIPTPSSFLLRTFSPGICTDASVSRIPVQSCALCPCLRWRRKCK 354
+A N L+ P + + R P + V LC L+WRRK +
Sbjct: 265 IARGMNYLHEHKPQAIIHRDLEPSNILRDDTGHLKVADFDLCKMLKWRRKVR 316
>01_06_0807 +
32125987-32126029,32126030-32126208,32126760-32126943,
32127714-32127788,32128079-32128188,32128747-32128965,
32129124-32129279,32129759-32129911,32130223-32130349,
32131598-32131728,32131858-32132139
Length = 552
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +2
Query: 383 DTMRNFEQVFVKLMRRYKYLEKMFEEEMKKVLVYLKGFEPQQRIKLARMT 532
D + FE FV + +Y Y + E K ++++ F P + +++T
Sbjct: 201 DGGKKFEDKFVDTLLKYGYKGQYMSENWLKQPLFIQSFAPTSLVHASKLT 250
>11_04_0311 + 16232961-16233079,16235135-16237080,16237246-16237370
Length = 729
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/47 (27%), Positives = 19/47 (40%)
Frame = +2
Query: 419 LMRRYKYLEKMFEEEMKKVLVYLKGFEPQQRIKLARMTALWIGNGCV 559
+ R Y ++K +YL F RI R+T WI G +
Sbjct: 181 MTRILNYCYSSLPADLKTCSLYLSVFPKDSRISRKRLTRRWIAEGFI 227
>01_07_0280 + 42452993-42453337,42453778-42453981
Length = 182
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 358 ASIGLGGFPVHRHRPTGQQETAGDKHIEYDLAIAP 254
A++G GG+ H HR +Q + G K +Y A P
Sbjct: 141 AAVGAGGYAYHEHREQ-KQASYGAKEQQYGYARMP 174
>01_06_0865 - 32567145-32568003,32568123-32568846,32569067-32569151
Length = 555
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +1
Query: 325 DGRGIPQDQYLHFLRQRRHGHNAQL*TGIRETDASVQIP 441
DG GIP + Y QRR L +R D Q+P
Sbjct: 480 DGLGIPSELYERMESQRRRHERVSLEVQVRLDDCCGQLP 518
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,929,536
Number of Sequences: 37544
Number of extensions: 355519
Number of successful extensions: 1350
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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