Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_H11
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin...    29   1.7  
AC006816-3|AAK85510.3|  508|Caenorhabditis elegans Hypothetical ...    27   6.9  
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AF016438-9|AAB65891.2|  394|Caenorhabditis elegans Nuclear hormo...    27   9.1  

>AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin
           related protein 2 protein.
          Length = 1335

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 309 RVVH*SLDDFILTWEI*NTRVIFAKKNV*IHKYIVK*FWK-SRRVKVTR 166
           R V  S D  +  WEI + R I +  ++ IH+YI    +K SR  + TR
Sbjct: 87  RFVSASADGRVCLWEIQDGRCIDSTSSIAIHRYIYPYTYKSSRHTRATR 135


>AC006816-3|AAK85510.3|  508|Caenorhabditis elegans Hypothetical
           protein Y71D11A.5 protein.
          Length = 508

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
 Frame = +1

Query: 106 PTTNGSSINHVSLERRCSKKTCYLDS-------S*FPKLFHYILVYLNIFFSKNYTCILD 264
           P     S+N V LE+  +  +C+++S       S FP +F  +++Y N     NY   L 
Sbjct: 130 PCKYNLSLNSVLLEKLWTPNSCFINSKTADIHKSPFPNIF--LMIYANGTVWTNYRLKLQ 187

Query: 265 LPC 273
            PC
Sbjct: 188 GPC 190


>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical
           protein C46C2.1b protein.
          Length = 1677

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 64  SLYTITTSTRSLILPTTNGSSINHVSLERRCSK 162
           SL +  TST S I+P T+  + NH  L    S+
Sbjct: 126 SLSSAATSTASAIIPFTSNVATNHPHLNHHVSR 158


>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical
           protein C46C2.1a protein.
          Length = 1838

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 64  SLYTITTSTRSLILPTTNGSSINHVSLERRCSK 162
           SL +  TST S I+P T+  + NH  L    S+
Sbjct: 126 SLSSAATSTASAIIPFTSNVATNHPHLNHHVSR 158


>AF016438-9|AAB65891.2|  394|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 103 protein.
          Length = 394

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/75 (20%), Positives = 31/75 (41%)
 Frame = +3

Query: 6   RRLQSRLSPRTLAVELAHSVTIHDYDVDSLTYSSYH*RIVH*SRESRKXXXXXXXXXXXX 185
           +RLQ  +   T ++  A +  +HDY    L  S+Y  R+    + +R             
Sbjct: 313 KRLQGDILEATESLVQAQANQLHDYYAKKLKLSNYSSRLTQLMKITRTLEADMRLRIEKK 372

Query: 186 XISKIISLYTCVFKH 230
            ++ + +++   F H
Sbjct: 373 KVADVFNIFKIQFSH 387


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,838,374
Number of Sequences: 27780
Number of extensions: 213708
Number of successful extensions: 363
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)