Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_H09
         (346 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    27   0.62 
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   1.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   2.5  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    25   4.4  
SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase Le...    24   5.8  
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    24   5.8  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    24   5.8  
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    24   5.8  
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    24   5.8  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    24   7.6  

>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 27.5 bits (58), Expect = 0.62
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = +2

Query: 119  NPDYNPGQVVIANPDPFF-SQPSNGP----SGNYEPISTGPAFVDF 241
            N  Y+  QV+     P F + P+N P    SG+Y PI   P F  F
Sbjct: 1543 NGGYSVIQVMDEGYSPVFVTPPTNSPYAEVSGDYNPIHVSPTFAAF 1588


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +2

Query: 197 GNYEPI--STGPAFVDFNHPNYPPKRYDNPLAR 289
           G+Y P   ST P    + +P+YPP  Y    AR
Sbjct: 117 GSYPPTQPSTQPLPQSYGYPSYPPAGYRGGSAR 149


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +2

Query: 173 SQPSNGPSGNYEPISTGPAFVDFNHPNYPP 262
           S P N P     P+S  PA    + P  PP
Sbjct: 265 SSPPNSPPRPIAPVSMNPAINSTSKPPLPP 294


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 317 YLYETFTSHHGREGCRIAWVDNWD 246
           Y+Y++      +   R  WV+NWD
Sbjct: 55  YIYKSNPGMEIKNAIRNGWVENWD 78


>SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase
           Leu1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 174 EKKGSGFAITTWP 136
           E  GSG+A+ TWP
Sbjct: 148 EDNGSGYAMDTWP 160


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 167 FFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 271
           + +Q   GPS NY   +     V+  +PNY  + Y
Sbjct: 151 YIAQLVGGPSINYSTAAMLLGAVNIGNPNYEVQNY 185


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 341 ISPSFKIAYLYETFTSHHGREGC 273
           +SP+F   +L ET+  H G + C
Sbjct: 316 VSPAFCPDFLIETYLDHAGEKFC 338


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 94  CGSHGQYGEEEKHESFHCRIVSELSAELILV 2
           CG  G YG ++KH      I S +  E  +V
Sbjct: 162 CGPPGFYGTQDKHLRLEKDIASFIGVERAIV 192


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 9/34 (26%), Positives = 14/34 (41%)
 Frame = +2

Query: 161 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 262
           +P   +PS+ P       +  P   +F    YPP
Sbjct: 99  EPVIEEPSSHPKNQKNQENNEPTSEEFEEGEYPP 132


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 127 IRVMIDHVHSVCGSHGQYGEEEKHESFHCRIVSELSAELI 8
           +R M DH   V  S  +  + E  E+  C+I  E++ + I
Sbjct: 683 MRQMADHPDLVLASKRKTVDIENQENIVCKICDEVAQDAI 722


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,428,888
Number of Sequences: 5004
Number of extensions: 28170
Number of successful extensions: 74
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)