Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_H08
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    27   1.9  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    25   4.5  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         25   5.9  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    25   5.9  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   7.8  

>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -2

Query: 403 TVSEVIIPYTQFIHFLKKIADKRAEPRAYSWSSIKHLLKQFIIIQIYDNK 254
           T SE  +P     +    I D+   P    ++ IKH  ++F+  +IY NK
Sbjct: 261 TSSETDVPKNINDYIYLLIDDRFVPPDRVYYTDIKHHFRKFLYEKIYMNK 310


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -2

Query: 358 LKKIADKRAEPRAYSWSSIKHLLKQFIIIQIYDNKSRII*NMK 230
           L+ I D    P  +SW  +K+L    ++  + + KSR +   K
Sbjct: 485 LEVIYDMMGTPDVHSWPEVKNLPWYELLKPVEEKKSRFVETFK 527


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 340 KRAEPRAYSWSSIKHL 293
           +R  P AY W+ IKHL
Sbjct: 669 RRRFPNAYGWTVIKHL 684


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 377 IRYNYLRYSRKLF*YHRYLNLIY*YRSINRNAN 475
           I+Y YL++ RKL+   +  + +  + + NRNA+
Sbjct: 2   IQYVYLKHMRKLWSLGKVRSTVLRFSTTNRNAS 34


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 313 WSSIKHLLKQFIIIQIYDNKSRII 242
           WS + HL+K   +   Y+N S+++
Sbjct: 288 WSDLAHLVKNRKVYMYYENGSQLL 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,742,170
Number of Sequences: 5004
Number of extensions: 32020
Number of successful extensions: 78
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)