Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_H07
         (514 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56963-4|AAB38117.2|  316|Caenorhabditis elegans Serpentine rece...    28   4.5  
AF025456-1|AAB70959.3|  438|Caenorhabditis elegans Hypothetical ...    27   6.0  

>U56963-4|AAB38117.2|  316|Caenorhabditis elegans Serpentine
           receptor, class v protein29 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -3

Query: 185 LCVYKVILLVY*LTNYISQYTNYLNIMYCIKSIWDTRSSVITHCN 51
           LC + ++ L Y L NY SQ T     +Y +++++   +  +++ N
Sbjct: 227 LCAFFIMFLYYLLQNYFSQ-TQNAGPVYTMRALYPIANGTLSYIN 270


>AF025456-1|AAB70959.3|  438|Caenorhabditis elegans Hypothetical
           protein C46F9.4 protein.
          Length = 438

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 272 IHYFEQISNLCHGQQHSMQSTLRRIFPDKLCVYK 171
           +H F  IS L +G+++      R   P +LC++K
Sbjct: 9   VHTFNDISKLGNGKRYYSDIEKRHNIPWRLCIFK 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,120,604
Number of Sequences: 27780
Number of extensions: 209181
Number of successful extensions: 417
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)