Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_H06
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit |Schizos...    27   1.2  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    25   6.6  
SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy...    25   6.6  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   6.6  
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    25   8.7  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   8.7  

>SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +3

Query: 147 SYNGEPDIGMLVTGTFVGYLIIFAGAAAGYIMQT---PSHKRIDIFYSLVG 290
           SYN   ++ +     F+G+L++  G   GY +     P +  +  F S VG
Sbjct: 17  SYNENTNLSLKTIDAFLGFLVVVGGLQFGYALLVGTYPFNSFLSGFISCVG 67


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +3

Query: 168 IGMLVTGTFVGY-LIIFAGAAAGYIMQT-PSHKRIDIFYSLVGVALFVASGAVIIDKYQH 341
           +GM +   F+   L+IFA  +   ++   P+       Y +V    + ++   +ID YQ+
Sbjct: 412 VGMCIASPFIPTGLLIFAWTSFPRLIWIGPAFSGAPFGYGMV--LFYFSANNYLIDVYQN 469

Query: 342 YGKSELKDKNLAKAS 386
           Y  S L  K + +++
Sbjct: 470 YCASALAAKTMVRSA 484


>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 300 FVASGAVIIDKYQHYGKSELKDKNLAKASLAIINGALLLMDAVLTQRG 443
           FV +G  IID+ +  G  ++KD      S A+I   L   +    Q G
Sbjct: 10  FVTTGMFIIDEIEFDGGKKIKDIIGGAGSFALIGARLWTSEPESQQLG 57


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 240  MQTPSHKRIDIFYSLVGVALFVASGAVI 323
            M TP  K  ++F+S V +   +A+GA+I
Sbjct: 1612 MDTPRAKFTNVFFSDVLIPALLAAGAII 1639


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +3

Query: 111 ALTCSCVA-LHYHSYNG-EPDIGMLVTGTFVGYLIIFAGAAAGYIMQTPSHKRIDIFYSL 284
           A TC  V  LH     G   D+G +   T++ Y  +  GAA      TP++     ++S+
Sbjct: 295 AATCKYVFDLHPTDRMGCAGDVGWITGHTYIVYGPLMLGAATLVFESTPAYPDYSRYWSV 354

Query: 285 V 287
           V
Sbjct: 355 V 355


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 442 PRCVRTASISNKAPLMMANDAFARFLSFNSLL 347
           P+C+   S+S +   ++ ND+F R L  ++ L
Sbjct: 339 PKCLTDGSVSWERLWVLINDSFKRTLDMDAYL 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,125,377
Number of Sequences: 5004
Number of extensions: 41020
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)