Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_H06
(510 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0307 + 2414709-2414762,2415769-2415841,2416090-2416154,241... 30 1.2
01_05_0659 - 24061318-24061575,24061664-24061918,24062001-240621... 28 3.8
01_05_0658 - 24043655-24043945,24044003-24044257,24044359-240445... 28 3.8
02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,329... 28 5.0
09_04_0085 + 14441123-14443507,14443731-14443787 27 8.8
08_02_0009 + 11216532-11218687,11220727-11225998 27 8.8
08_02_0008 + 11212351-11214506,11214548-11214584 27 8.8
08_02_0007 + 11208170-11210325,11210367-11210403 27 8.8
08_02_0004 + 11187587-11187923,11187939-11189861,11190195-11190391 27 8.8
08_02_0003 + 11180421-11180757,11180773-11185715 27 8.8
08_02_0002 + 11173365-11173512,11173528-11178470 27 8.8
05_03_0085 - 8271718-8272005,8272110-8272393,8273610-8274012,827... 27 8.8
01_05_0660 - 24071523-24071780,24071873-24072127,24072209-240723... 27 8.8
>03_01_0307 + 2414709-2414762,2415769-2415841,2416090-2416154,
2416288-2416365,2416880-2416999,2418021-2418091,
2418808-2418900,2419242-2419311,2420236-2420436,
2421345-2421557,2422354-2422440,2422441-2422652,
2422901-2423042,2423424-2423592,2424050-2424126,
2424393-2424563,2425095-2425171,2425299-2425401,
2426066-2426185,2426301-2426444,2426826-2426975,
2427398-2427541,2427816-2427903,2428672-2428799,
2429329-2429533,2429843-2430015,2430174-2430392,
2430490-2430684
Length = 1213
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +3
Query: 87 SIIKFAELALTCSCVALHYHSYNGEPDIGMLVTGTFVGYLIIFAGAAAGYIMQT--PSHK 260
S++++A LA T + + HY ++ P G + T + +F+G Y+ ++ PS K
Sbjct: 1030 SVLEYA-LAFTSAALDRHYSKWSATPKTGFIDITTSKDFYRVFSGLQYSYLEESINPSRK 1088
Query: 261 R 263
+
Sbjct: 1089 Q 1089
>01_05_0659 - 24061318-24061575,24061664-24061918,24062001-24062172,
24062258-24062381,24062442-24062485,24063601-24063734,
24063822-24063905,24064100-24064390,24064713-24065045,
24065145-24065389,24065644-24065910,24065997-24066157,
24066253-24066569,24066665-24066946,24067024-24067325,
24067398-24067488,24067796-24067849,24067963-24068039,
24068159-24068318,24068653-24068737,24069029-24069238,
24069344-24069732
Length = 1444
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -2
Query: 509 GYVYGFVCIIGCIKYKHVFKLASTLCE-NSVHK*QSTVDD 393
GY+ G + I G K + F S CE N +H Q TV +
Sbjct: 932 GYIEGNITISGYPKKQETFARVSGYCEQNDIHSPQVTVSE 971
>01_05_0658 - 24043655-24043945,24044003-24044257,24044359-24044530,
24044617-24044844,24045688-24045821,24045908-24045991,
24046202-24046492,24046571-24046903,24047002-24047246,
24047476-24047742,24048305-24048465,24048556-24048872,
24048966-24049247,24049325-24049626,24049699-24049789,
24049881-24049934,24050028-24050104,24050192-24050367,
24051331-24051540,24051626-24052029
Length = 1457
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -2
Query: 509 GYVYGFVCIIGCIKYKHVFKLASTLCE-NSVHK*QSTVDD 393
GY+ G + I G K + F S CE N +H Q TV +
Sbjct: 914 GYIEGNISISGYPKKQETFARVSGYCEQNDIHSPQVTVSE 953
>02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,
3299528-3299531,3299814-3299949,3300034-3300090,
3301689-3301786,3301876-3301947,3302056-3302228,
3302552-3302698,3303113-3303336,3305300-3305306,
3305634-3305800,3306033-3306068,3306787-3307004,
3307115-3307172,3307761-3307842,3308045-3308207,
3308594-3308598,3308700-3308885,3308969-3309548,
3309642-3309774,3309880-3309948,3310184-3310395,
3310654-3310891,3311228-3311386,3311501-3311926,
3312010-3312447,3312593-3312712,3312784-3313266,
3313471-3314009,3314178-3314667,3314836-3314904,
3315735-3315839,3315940-3316158,3316254-3316508,
3316602-3316651,3317175-3317284,3317372-3317454,
3317560-3317772,3317870-3318040
Length = 2391
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -2
Query: 488 CIIGCIKYKHV-FKLASTLCENSVHK 414
CI+GC+++ HV +LA+ C S+ K
Sbjct: 1647 CILGCVRHPHVAVRLAAARCITSMAK 1672
>09_04_0085 + 14441123-14443507,14443731-14443787
Length = 813
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 329 VNDDSTTGDE*GNTDQRIENINTLVRRGLHNI 234
+N+ +E NT+Q + INTL GLHN+
Sbjct: 426 INEMENIENEIDNTEQYNDFINTLDEVGLHNL 457
>08_02_0009 + 11216532-11218687,11220727-11225998
Length = 2475
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 329 VNDDSTTGDE*GNTDQRIENINTLVRRGLHNI 234
+N+ +E NT+Q + INTL GLHN+
Sbjct: 413 INEMENIENEIDNTEQYNDFINTLDEVGLHNL 444
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 329 VNDDSTTGDE*GNTDQRIENINTLVRRGLHNI 234
+N+ +E NT+Q + INTL GLHN+
Sbjct: 1127 INEMENIENEIDNTEQYNDFINTLDEVGLHNL 1158
>08_02_0008 + 11212351-11214506,11214548-11214584
Length = 730
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 329 VNDDSTTGDE*GNTDQRIENINTLVRRGLHNI 234
+N+ +E NT+Q + INTL GLHN+
Sbjct: 413 INEMENIENEIDNTEQYNDFINTLDEVGLHNL 444
>08_02_0007 + 11208170-11210325,11210367-11210403
Length = 730
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 329 VNDDSTTGDE*GNTDQRIENINTLVRRGLHNI 234
+N+ +E NT+Q + INTL GLHN+
Sbjct: 413 INEMENIENEIDNTEQYNDFINTLDEVGLHNL 444
>08_02_0004 + 11187587-11187923,11187939-11189861,11190195-11190391
Length = 818
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 329 VNDDSTTGDE*GNTDQRIENINTLVRRGLHNI 234
+N+ +E NT+Q + INTL GLHN+
Sbjct: 421 INEMENIENEIDNTEQYNDFINTLDEVGLHNL 452
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 329 VNDDSTTGDE*GNTDQRIENINTLVRRGLHNI 234
+N+ +E NT+Q + INTL GLHN+
Sbjct: 411 INEMENIENEIDNTEQYNDFINTLDEVGLHNL 442
>08_02_0002 + 11173365-11173512,11173528-11178470
Length = 1696
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 329 VNDDSTTGDE*GNTDQRIENINTLVRRGLHNI 234
+N+ +E NT+Q + INTL GLHN+
Sbjct: 348 INEMENIENEIDNTEQYNDFINTLDEVGLHNL 379
>05_03_0085 -
8271718-8272005,8272110-8272393,8273610-8274012,
8274792-8274816,8275686-8276149
Length = 487
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 192 FVGYLIIFAGAAAGYIMQTPSHKRIDIFYSLVGVALFVASGAVIIDKYQHYGK 350
F+GY+I FAG +G + ++ SL G+++ +I + H K
Sbjct: 351 FLGYIIGFAGVVSGIALYNRTYSNFTTHRSL-GISVLALGSLQVIAFFLHPNK 402
>01_05_0660 - 24071523-24071780,24071873-24072127,24072209-24072380,
24072458-24072685,24072785-24072918,24073005-24073088,
24073231-24073521,24073599-24073931,24074016-24074266,
24074354-24074620,24074707-24074867,24074978-24075294,
24075386-24075667,24075753-24076054,24076147-24076237,
24076326-24076379,24076497-24076573,24076700-24076859,
24077129-24077213,24077421-24077630,24077736-24078097
Length = 1457
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -2
Query: 509 GYVYGFVCIIGCIKYKHVFKLASTLCE-NSVHK*QSTV 399
GY+ G + I G K + F S CE N +H Q TV
Sbjct: 925 GYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTV 962
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,776,360
Number of Sequences: 37544
Number of extensions: 274324
Number of successful extensions: 638
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -