Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_H06
         (510 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.60 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   1.8  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   4.2  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   4.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   7.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 0.60
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 315  AVIIDKYQHYGKSELKDKNLAKASLAIINGALLLMDAVLTQRG 443
            AV I +  H  + + + K LAK   +  +G L+ ++ +L Q+G
Sbjct: 1095 AVQIQQSPHQQQQQQQQKILAKVLTSSNSGQLISVENLLAQKG 1137



 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 196 TKVPVTSMPMSGSPL 152
           T VP+TS+P S + +
Sbjct: 852 TTVPITSLPASSTSI 866


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
 Frame = +1

Query: 385 HWPSSTVLCYLWTLFS--HSVEANLNTCLYLIHPIIQ-TNPYTY 507
           +W   T++C LW  F       + LN C+  +      T P  Y
Sbjct: 106 NWSFGTIMCDLWVSFDVLSCTASILNLCMISVDRFCAITKPLKY 149


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 129 VALHYHSYNGEPDIGMLVTGTFVGYLIIFAGAAAGYIMQTP 251
           V  +Y++Y G   I  +++GT   Y +  A  A   ++ TP
Sbjct: 436 VWFYYYTYKGAHSISEIMSGTSNKYGVCHADDAY-MVVDTP 475


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 129 VALHYHSYNGEPDIGMLVTGTFVGYLIIFAGAAAGYIMQTP 251
           V  +Y++Y G   I  +++GT   Y +  A  A   ++ TP
Sbjct: 436 VWFYYYTYKGAHSISEIMSGTSNKYGVCHADDAY-MVVDTP 475


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 11/46 (23%), Positives = 18/46 (39%)
 Frame = +3

Query: 96  KFAELALTCSCVALHYHSYNGEPDIGMLVTGTFVGYLIIFAGAAAG 233
           K   + ++C C         G    G +VTG   G +++ A    G
Sbjct: 3   KGRHVVMSCCCWCCDNLGGPGSSSAGGVVTGASGGSIVVGANNGGG 48


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 69  FSVTSILKLCLQTRTRLPSIT 7
           FS  SIL LC+ +  R  +IT
Sbjct: 129 FSTASILNLCVISLDRYWAIT 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,244
Number of Sequences: 438
Number of extensions: 2961
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)