Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_H05
         (315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    50   6e-08
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    26   1.2  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   2.0  
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    25   3.6  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    24   4.7  
SPBC8D2.12c |||mitochondrial DNA binding protein |Schizosaccharo...    24   4.7  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 50.4 bits (115), Expect = 6e-08
 Identities = 22/38 (57%), Positives = 29/38 (76%)
 Frame = +1

Query: 202 LQEQFDQAAANVRNLKSVPSDSDLLELYALFKQATSGD 315
           +   F+QAAA+V+ LK  P+  +LL+LYALFKQAT GD
Sbjct: 1   MSSTFEQAAADVKELKETPNSDELLKLYALFKQATVGD 38


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 82  RLFDITYQLFTAYFNQFVKRNRVERSLL 165
           R FD+T+ L +    QF   NRVE+S L
Sbjct: 405 RTFDLTFTLRSGTSYQFSNINRVEQSAL 432


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 91   DITYQLFTAYFNQFVKRNRVERSLL 165
            +++ QL   YF  F K NRVE  +L
Sbjct: 1791 ELSQQLPKGYFGYFFKTNRVEMEVL 1815


>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 107 SWYVISNKRSGYDE 66
           S+Y+ +NK+ GYDE
Sbjct: 98  SFYIANNKQKGYDE 111


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 112 TAYFNQFVKRNRVERSLLYLNLP 180
           T ++N++++ N  +R LLY+  P
Sbjct: 525 TEFYNEYLRENSRKRMLLYIMNP 547


>SPBC8D2.12c |||mitochondrial DNA binding protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -2

Query: 167 YRSERSTRFLFTNWLK*AVNSWYVISNKRSGYDE 66
           Y   R   F  + W+    N W  I +K+S  D+
Sbjct: 14  YHFSRFRSFTTSGWIMSGHNKWSKIKHKKSANDQ 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,164,476
Number of Sequences: 5004
Number of extensions: 19118
Number of successful extensions: 41
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)