Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_H05
         (315 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0107 - 20883353-20883627,20883739-20883801,20884608-208847...    42   1e-04
08_01_0417 - 3692247-3692329,3692442-3692504,3693233-3693350,369...    39   7e-04
06_01_0108 - 860080-860162,860276-860338,860857-860974,861481-86...    38   0.001
03_02_0592 - 9687700-9687933,9688515-9688591,9688891-9688999,968...    30   0.33 
08_02_1011 - 23544917-23544964,23545334-23545822,23546661-235470...    28   1.8  
06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458     26   7.1  

>03_05_0107 -
           20883353-20883627,20883739-20883801,20884608-20884725,
           20885012-20885023
          Length = 155

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/40 (50%), Positives = 25/40 (62%)
 Frame = +1

Query: 196 MSLQEQFDQAAANVRNLKSVPSDSDLLELYALFKQATSGD 315
           M LQE F++ A  V+ L    S+ D L LY L+KQAT GD
Sbjct: 1   MGLQEDFEEYAEKVKTLPESTSNEDKLILYGLYKQATVGD 40


>08_01_0417 -
           3692247-3692329,3692442-3692504,3693233-3693350,
           3694084-3694095
          Length = 91

 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 19/40 (47%), Positives = 24/40 (60%)
 Frame = +1

Query: 196 MSLQEQFDQAAANVRNLKSVPSDSDLLELYALFKQATSGD 315
           M LQE F+Q A   + L    S+ + L LY L+KQAT GD
Sbjct: 1   MGLQEDFEQYAEKAKTLPESTSNENKLILYGLYKQATVGD 40


>06_01_0108 -
           860080-860162,860276-860338,860857-860974,861481-861492
          Length = 91

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = +1

Query: 196 MSLQEQFDQAAANVRNLKSVPSDSDLLELYALFKQATSG 312
           M LQE+F++ A   + L    S+ D L LY L+KQAT G
Sbjct: 1   MGLQEEFEEFAEKAKTLPDTISNEDKLLLYGLYKQATVG 39


>03_02_0592 -
           9687700-9687933,9688515-9688591,9688891-9688999,
           9689162-9689260,9689368-9689454,9689570-9689630,
           9689739-9689813,9689936-9689961
          Length = 255

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 23/69 (33%), Positives = 34/69 (49%)
 Frame = +1

Query: 55  AKDNSS*PLRLFDITYQLFTAYFNQFVKRNRVERSLLYLNLPIS*VIMSLQEQFDQAAAN 234
           A  ++S P RLFD T +L+  YF  F +R  + R+   L   I  V + LQ++       
Sbjct: 18  ALGSASEPPRLFDGTTRLYICYFCPFAQRAWIIRNFKGLQDKIELVGIDLQDKPAWYKEK 77

Query: 235 VRNLKSVPS 261
           V    +VPS
Sbjct: 78  VYEQGTVPS 86


>08_02_1011 -
           23544917-23544964,23545334-23545822,23546661-23547054,
           23548707-23549104
          Length = 442

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = -2

Query: 197 MMTQEMGKFRYRSERSTRFLFTNWLK*AVNSWYVISNKRSGYDE 66
           M+ +E   F+ R E+  +F  + W +     WY   N     DE
Sbjct: 391 MLAEEQADFQKRQEQELKFTASGWKRDGHGRWYRDENVEFDSDE 434


>06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458
          Length = 1217

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +1

Query: 118 YFNQFVKRNRVERSLLYLNLPIS*VIMSL 204
           YFN  V+R+  ERSL  L+LPI  V+  L
Sbjct: 486 YFNDLVQRSFFERSL--LDLPIEYVMHDL 512


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,124,819
Number of Sequences: 37544
Number of extensions: 111910
Number of successful extensions: 192
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)