Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_H05
         (315 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003140-9|AAB54171.1|   86|Caenorhabditis elegans Acyl-coenzyme...    49   8e-07
Z46794-8|CAA86779.1|  385|Caenorhabditis elegans Hypothetical pr...    47   3e-06
AL023828-1|CAA19448.1|  115|Caenorhabditis elegans Hypothetical ...    42   1e-04
Z68004-6|CAA91987.2|  116|Caenorhabditis elegans Hypothetical pr...    35   0.014
U00063-1|AAK18960.1|  146|Caenorhabditis elegans Acyl-coenzyme a...    32   0.076
U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical pr...    27   2.1  
AF039042-9|AAC48245.1|  431|Caenorhabditis elegans Hypothetical ...    27   2.8  
Z92826-2|CAB07319.1|  266|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z81120-7|CAB03343.2|  274|Caenorhabditis elegans Hypothetical pr...    26   6.6  
Z74476-5|CAA98965.1|  325|Caenorhabditis elegans Hypothetical pr...    26   6.6  
Z71185-5|CAA94911.1| 1078|Caenorhabditis elegans Hypothetical pr...    26   6.6  
U41012-4|AAA82296.2|  413|Caenorhabditis elegans Hypothetical pr...    25   8.7  

>AF003140-9|AAB54171.1|   86|Caenorhabditis elegans Acyl-coenzyme a
           binding proteinprotein 1 protein.
          Length = 86

 Score = 48.8 bits (111), Expect = 8e-07
 Identities = 22/34 (64%), Positives = 27/34 (79%)
 Frame = +1

Query: 214 FDQAAANVRNLKSVPSDSDLLELYALFKQATSGD 315
           FD AAA V+ LK+ PS+ +LL+LYALFKQ T GD
Sbjct: 5   FDDAAATVKTLKTSPSNDELLKLYALFKQGTVGD 38


>Z46794-8|CAA86779.1|  385|Caenorhabditis elegans Hypothetical
           protein R06F6.9 protein.
          Length = 385

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 25/54 (46%), Positives = 34/54 (62%)
 Frame = +1

Query: 154 RSLLYLNLPIS*VIMSLQEQFDQAAANVRNLKSVPSDSDLLELYALFKQATSGD 315
           RS+LY N  +S    S Q  F++A  N++ LK  P +   L+LY LFKQAT+GD
Sbjct: 10  RSVLY-NPQVSVRSFSAQADFEKAQKNLKTLKEEPDNDVKLQLYGLFKQATAGD 62


>AL023828-1|CAA19448.1|  115|Caenorhabditis elegans Hypothetical
           protein Y17G7B.1 protein.
          Length = 115

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 19/34 (55%), Positives = 25/34 (73%)
 Frame = +1

Query: 214 FDQAAANVRNLKSVPSDSDLLELYALFKQATSGD 315
           F+ AA  +R LKS P+D + L+LYAL+KQA  GD
Sbjct: 15  FEIAAEEMRRLKSEPTDRERLKLYALYKQALHGD 48


>Z68004-6|CAA91987.2|  116|Caenorhabditis elegans Hypothetical
           protein F47B10.7 protein.
          Length = 116

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
 Frame = +1

Query: 196 MSLQEQFDQAAANVRNL-KSVP---SDSDLLELYALFKQATSGD 315
           MSLQE+FD A   ++ L K+ P   S+   L  Y+LFKQA+ GD
Sbjct: 1   MSLQEKFDAAVEIIQKLPKTGPVATSNDQKLTFYSLFKQASIGD 44


>U00063-1|AAK18960.1|  146|Caenorhabditis elegans Acyl-coenzyme a
           binding proteinprotein 4 protein.
          Length = 146

 Score = 32.3 bits (70), Expect = 0.076
 Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
 Frame = +1

Query: 199 SLQEQFDQAAANVRNL-KSVP---SDSDLLELYALFKQATSG 312
           SL EQF+ A   +  L K+ P   S +D L++Y+L+KQATSG
Sbjct: 4   SLDEQFEAAVWIINALPKNGPIKTSINDQLQMYSLYKQATSG 45


>U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical
           protein F47D12.5 protein.
          Length = 633

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
 Frame = +1

Query: 79  LRLFDITYQLF---TAYFNQFVKRNRVERSLLYLNLPIS*VIMSLQEQFDQAAANVRNLK 249
           LR+ D++  ++   T   NQ+V+ N+V + L +L    + +  +L EQ   +  N++ + 
Sbjct: 148 LRILDVSRSMYKHDTKIINQYVQSNKVLKELRFLECSGTDINKNLLEQILNSHDNLQQVA 207

Query: 250 SV 255
           ++
Sbjct: 208 AI 209


>AF039042-9|AAC48245.1|  431|Caenorhabditis elegans Hypothetical
           protein ZK697.2 protein.
          Length = 431

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 91  DITYQLFTAYFNQFVKRNRVERSLLYLNLPIS 186
           D  Y+L T Y  QFV  N + R L Y N+ +S
Sbjct: 163 DRLYKLATLYIEQFVNLN-MRRRLTYANVSLS 193


>Z92826-2|CAB07319.1|  266|Caenorhabditis elegans Hypothetical
           protein C18D11.2 protein.
          Length = 266

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = +1

Query: 214 FDQAAANVRNL-KSVP---SDSDLLELYALFKQATSG 312
           F+ A   V+NL K  P   S  + L  YALFKQAT G
Sbjct: 4   FETAVFIVQNLPKDGPIKTSTDEKLNFYALFKQATHG 40


>Z81120-7|CAB03343.2|  274|Caenorhabditis elegans Hypothetical
           protein T12D8.3 protein.
          Length = 274

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 202 LQEQFDQAAANVRNLKSVPSDSDLLELYALFKQATSG 312
           L+ +FD A   +    +      +L+ Y L+KQA  G
Sbjct: 28  LEAKFDAATTRLPGFLTKIDQKTILKFYGLYKQAVEG 64


>Z74476-5|CAA98965.1|  325|Caenorhabditis elegans Hypothetical
           protein W05B10.5 protein.
          Length = 325

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/56 (23%), Positives = 32/56 (57%)
 Frame = +1

Query: 94  ITYQLFTAYFNQFVKRNRVERSLLYLNLPIS*VIMSLQEQFDQAAANVRNLKSVPS 261
           +TYQ+F+  F QF+    +  S++++      +++++ E+ ++ A  +  +KS  S
Sbjct: 251 VTYQVFSLLFFQFI---TLAFSMVFIRTVEGFIMIAMNERINKGAKLLIGMKSAES 303


>Z71185-5|CAA94911.1| 1078|Caenorhabditis elegans Hypothetical
           protein C35A5.8 protein.
          Length = 1078

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +1

Query: 241 NLKSVPSDSDLLEL-YALFKQATSG 312
           NLK  PS+SDLL+L  +LFK  + G
Sbjct: 587 NLKFWPSNSDLLDLSLSLFKDLSLG 611


>U41012-4|AAA82296.2|  413|Caenorhabditis elegans Hypothetical
           protein C06A6.5 protein.
          Length = 413

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 296 LNRAYSSSKSLSLGTDFRFLTLAAA*SNCS*RDMMTQEMGK 174
           + + Y S++S+   T+F    L+ A +  S +D + QEM K
Sbjct: 114 ITKEYRSTRSVEALTNFVKFQLSTAINEFSSQDQLNQEMDK 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,240,006
Number of Sequences: 27780
Number of extensions: 102090
Number of successful extensions: 221
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)