Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_H02
         (591 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X82782-1|CAA58023.1|  271|Drosophila melanogaster ribosomal prot...   195   4e-50
AY089570-1|AAL90308.1|  271|Drosophila melanogaster RE05022p pro...   195   4e-50
AE014298-903|AAF46169.1|  271|Drosophila melanogaster CG3314-PD,...   195   4e-50
AE014298-902|AAN09172.1|  271|Drosophila melanogaster CG3314-PC,...   195   4e-50
AE014298-901|AAN09170.1|  271|Drosophila melanogaster CG3314-PA,...   195   4e-50
AF208396-1|AAF20209.1|  127|Drosophila melanogaster Hoi-polloi p...    35   0.095
AE014134-1677|AAF52798.2|  127|Drosophila melanogaster CG3949-PA...    35   0.095
M89628-1|AAB00734.1|  661|Drosophila melanogaster retinal degene...    32   0.51 
BT015959-1|AAV36844.1|  603|Drosophila melanogaster RH46370p pro...    32   0.51 
AE014296-3312|AAF49044.2|  603|Drosophila melanogaster CG6571-PA...    32   0.51 
AE014296-3311|AAO41219.1|  661|Drosophila melanogaster CG6571-PD...    32   0.51 
AE014296-3310|AAO41218.1|  661|Drosophila melanogaster CG6571-PC...    32   0.51 
AE014296-3309|AAO41217.1|  661|Drosophila melanogaster CG6571-PB...    32   0.51 

>X82782-1|CAA58023.1|  271|Drosophila melanogaster ribosomal protein
           L7a protein.
          Length = 271

 Score =  195 bits (475), Expect = 4e-50
 Identities = 93/136 (68%), Positives = 107/136 (78%)
 Frame = +2

Query: 182 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 361
           LFEKR KNF IGQ++QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKT
Sbjct: 36  LFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKT 95

Query: 362 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 541
           TA  LFK+LEKYRPE+                   D  P K+P+ + AGTNTVTKL+E+K
Sbjct: 96  TAVKLFKLLEKYRPESALAKNVRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQK 155

Query: 542 KAQLVVIAHDVDPIEL 589
           KAQLVVIAHDVDP+EL
Sbjct: 156 KAQLVVIAHDVDPLEL 171


>AY089570-1|AAL90308.1|  271|Drosophila melanogaster RE05022p
           protein.
          Length = 271

 Score =  195 bits (475), Expect = 4e-50
 Identities = 93/136 (68%), Positives = 107/136 (78%)
 Frame = +2

Query: 182 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 361
           LFEKR KNF IGQ++QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKT
Sbjct: 36  LFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKT 95

Query: 362 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 541
           TA  LFK+LEKYRPE+                   D  P K+P+ + AGTNTVTKL+E+K
Sbjct: 96  TAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQK 155

Query: 542 KAQLVVIAHDVDPIEL 589
           KAQLVVIAHDVDP+EL
Sbjct: 156 KAQLVVIAHDVDPLEL 171


>AE014298-903|AAF46169.1|  271|Drosophila melanogaster CG3314-PD,
           isoform D protein.
          Length = 271

 Score =  195 bits (475), Expect = 4e-50
 Identities = 93/136 (68%), Positives = 107/136 (78%)
 Frame = +2

Query: 182 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 361
           LFEKR KNF IGQ++QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKT
Sbjct: 36  LFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKT 95

Query: 362 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 541
           TA  LFK+LEKYRPE+                   D  P K+P+ + AGTNTVTKL+E+K
Sbjct: 96  TAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQK 155

Query: 542 KAQLVVIAHDVDPIEL 589
           KAQLVVIAHDVDP+EL
Sbjct: 156 KAQLVVIAHDVDPLEL 171


>AE014298-902|AAN09172.1|  271|Drosophila melanogaster CG3314-PC,
           isoform C protein.
          Length = 271

 Score =  195 bits (475), Expect = 4e-50
 Identities = 93/136 (68%), Positives = 107/136 (78%)
 Frame = +2

Query: 182 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 361
           LFEKR KNF IGQ++QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKT
Sbjct: 36  LFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKT 95

Query: 362 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 541
           TA  LFK+LEKYRPE+                   D  P K+P+ + AGTNTVTKL+E+K
Sbjct: 96  TAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQK 155

Query: 542 KAQLVVIAHDVDPIEL 589
           KAQLVVIAHDVDP+EL
Sbjct: 156 KAQLVVIAHDVDPLEL 171


>AE014298-901|AAN09170.1|  271|Drosophila melanogaster CG3314-PA,
           isoform A protein.
          Length = 271

 Score =  195 bits (475), Expect = 4e-50
 Identities = 93/136 (68%), Positives = 107/136 (78%)
 Frame = +2

Query: 182 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 361
           LFEKR KNF IGQ++QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKT
Sbjct: 36  LFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKT 95

Query: 362 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 541
           TA  LFK+LEKYRPE+                   D  P K+P+ + AGTNTVTKL+E+K
Sbjct: 96  TAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQK 155

Query: 542 KAQLVVIAHDVDPIEL 589
           KAQLVVIAHDVDP+EL
Sbjct: 156 KAQLVVIAHDVDPLEL 171


>AF208396-1|AAF20209.1|  127|Drosophila melanogaster Hoi-polloi
           protein.
          Length = 127

 Score = 34.7 bits (76), Expect = 0.095
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +2

Query: 491 NTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIEL 589
           N LR G N  TK + +  A +VV+A D +PIE+
Sbjct: 32  NQLRKGANEATKTLNRGLADIVVLAGDAEPIEI 64


>AE014134-1677|AAF52798.2|  127|Drosophila melanogaster CG3949-PA
           protein.
          Length = 127

 Score = 34.7 bits (76), Expect = 0.095
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +2

Query: 491 NTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIEL 589
           N LR G N  TK + +  A +VV+A D +PIE+
Sbjct: 32  NQLRKGANEATKTLNRGLADIVVLAGDAEPIEI 64


>M89628-1|AAB00734.1|  661|Drosophila melanogaster retinal
           degeneration C protein protein.
          Length = 661

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 485 RPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIE 586
           RP+  +  T+ VT L +K     +V+ HD+DP +
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 650


>BT015959-1|AAV36844.1|  603|Drosophila melanogaster RH46370p
           protein.
          Length = 603

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 485 RPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIE 586
           RP+  +  T+ VT L +K     +V+ HD+DP +
Sbjct: 559 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 592


>AE014296-3312|AAF49044.2|  603|Drosophila melanogaster CG6571-PA,
           isoform A protein.
          Length = 603

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 485 RPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIE 586
           RP+  +  T+ VT L +K     +V+ HD+DP +
Sbjct: 559 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 592


>AE014296-3311|AAO41219.1|  661|Drosophila melanogaster CG6571-PD,
           isoform D protein.
          Length = 661

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 485 RPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIE 586
           RP+  +  T+ VT L +K     +V+ HD+DP +
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 650


>AE014296-3310|AAO41218.1|  661|Drosophila melanogaster CG6571-PC,
           isoform C protein.
          Length = 661

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 485 RPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIE 586
           RP+  +  T+ VT L +K     +V+ HD+DP +
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 650


>AE014296-3309|AAO41217.1|  661|Drosophila melanogaster CG6571-PB,
           isoform B protein.
          Length = 661

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 485 RPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIE 586
           RP+  +  T+ VT L +K     +V+ HD+DP +
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 650


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,655,223
Number of Sequences: 53049
Number of extensions: 430873
Number of successful extensions: 1002
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2379510885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)