Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_H01
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     29   0.55 
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    29   0.55 
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    27   2.2  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    26   2.9  
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces...    26   2.9  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    25   5.1  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    25   5.1  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    25   5.1  
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    25   5.1  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    25   5.1  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    25   9.0  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         25   9.0  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    25   9.0  

>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 34  KTSAMLKSPPQIDSHYSRAADAH--SHDHEQEQKE 132
           K S   + PPQID H S  AD +  S+   QE KE
Sbjct: 259 KNSGRPQKPPQIDPHSSSLADEYRESNKRLQESKE 293


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +3

Query: 417 ILRILYHRSLLVECTPHSLVLIV 485
           I+R+L  R+ LVE  PHSL+L V
Sbjct: 360 IVRLLQQRNRLVEQVPHSLILSV 382


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 100 HSHDHEQEQKEEPTQGPYEDDDGMVGDDPA 189
           H+H HE    ++P    +ED+  +V D PA
Sbjct: 92  HAHRHEPPVSDQPVGIVHEDESYVVIDKPA 121


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 354 LIRYEVYQKYYFNVKASLLKIILRILYHR 440
           L R E+Y+ YY ++K  +  + +  L HR
Sbjct: 434 LPRVEIYEDYYNDIKDQIFGVDVEFLSHR 462


>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 31  LKTSAMLKSPPQIDSHYSRAADAHSH-DHEQEQKEEPTQGPYEDDD 165
           L  S  L S  + D   S+  D+ S  D E+E   EP    Y++DD
Sbjct: 83  LAFSKELNSSLENDEESSQQEDSSSKSDSEEESSMEPKTTEYDEDD 128


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 155 KMTTVWWVMTLPL 193
           K T  WW MT PL
Sbjct: 305 KFTVAWWAMTFPL 317


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 155 KMTTVWWVMTLPL 193
           K T  WW MT PL
Sbjct: 305 KFTVAWWAMTFPL 317


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 155 KMTTVWWVMTLPL 193
           K T  WW MT PL
Sbjct: 305 KFTVAWWAMTFPL 317


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 52  KSPPQIDSHYSRAADAHSHDHEQEQKEEPTQGPYEDDDGMVG 177
           KSP  +D H     +    D+E EQ  +     YE D+ + G
Sbjct: 6   KSPIDVDLHLDNEEERTFVDYEFEQGRKDKAPIYESDETVKG 47


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 155 KMTTVWWVMTLPL 193
           K T  WW MT PL
Sbjct: 305 KFTVAWWAMTFPL 317


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1019

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 88   AADAHSHDHEQEQKEEPTQGPYEDD 162
            A+DA   D E+E+ EE ++   E+D
Sbjct: 952  ASDADPSDEEEEESEEYSEDASEED 976


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = +2

Query: 35  KPARC*NLRLRSILITRAPPTLTRTTMNRSKKKNPLRVLMKMTTVWWVMTLPLIYL 202
           +P+   N  + ++L+T    T+   ++N    +NP R+L     +W++M    IY+
Sbjct: 312 QPSSSRNSWIFTLLLTFTQLTIFYLSLN-CLIENPYRMLRNTFPIWFIMQTLQIYI 366


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 115 EQEQKEEPTQGPYEDDDGMVGDD 183
           +++++E+P  G  EDDD +V  D
Sbjct: 201 DKDEEEKPWSGDEEDDDELVVKD 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,788,695
Number of Sequences: 5004
Number of extensions: 30118
Number of successful extensions: 95
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)