Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_H01
         (518 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0296 + 7041463-7042351,7042450-7042606,7042758-7042839,704...    29   2.2  
12_02_1193 + 26891619-26892456,26892545-26893884                       28   3.9  
02_04_0289 + 21615745-21616155,21617417-21617870,21618162-216182...    28   5.2  
08_02_0502 + 17844775-17845092,17845528-17845634,17846039-178464...    27   6.8  
02_05_0327 + 27980841-27980972,27981673-27981763,27981848-279819...    27   6.8  
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172...    27   9.0  
05_04_0073 + 17669311-17671635                                         27   9.0  
05_01_0002 - 8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,9...    27   9.0  

>09_02_0296 +
           7041463-7042351,7042450-7042606,7042758-7042839,
           7043082-7043120
          Length = 388

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +3

Query: 345 LLPLIRYEVYQKYYFNVKASLLKIILRILYHRSLLVECTP 464
           L+P I+ E+      +VKA ++K I R  Y  S++++CTP
Sbjct: 244 LIPRIQNELIHLLACDVKAEIMKKIKRAKYF-SVILDCTP 282


>12_02_1193 + 26891619-26892456,26892545-26893884
          Length = 725

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 58  PPQIDSHYSRAADAHSHDHEQEQKEE 135
           PP  DS      DA  HD E+E++EE
Sbjct: 356 PPSSDSDADDEDDAEEHDGEEEREEE 381


>02_04_0289 +
           21615745-21616155,21617417-21617870,21618162-21618217,
           21618307-21618437,21618565-21618727
          Length = 404

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -2

Query: 184 GHHPPYRRHLHKDPEWVLL-FAPVHG 110
           G HP    H+   P WV++ + P HG
Sbjct: 33  GMHPHAHHHIQAQPRWVVIPYPPPHG 58


>08_02_0502 +
           17844775-17845092,17845528-17845634,17846039-17846492,
           17846623-17846694,17846804-17846925,17847079-17847294,
           17847392-17847500,17847618-17847730,17847916-17848063,
           17848274-17848396
          Length = 593

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 389 EIILLVDFISN*WKKRDRCDHRVG 318
           ++ L+ DF SN WK + +CDH+ G
Sbjct: 469 DVELVGDFTSN-WKDKVKCDHKGG 491


>02_05_0327 +
           27980841-27980972,27981673-27981763,27981848-27981900,
           27981990-27982154,27982544-27982662,27982880-27982997,
           27983096-27983173,27983326-27983424
          Length = 284

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
 Frame = +3

Query: 297 GTSRLLKSDSMVASVSLLPLIRYEVYQKY-YFNVKASLLKI---ILRILYHRSLLVECTP 464
           G  + L+    VA++  L  +   +   +  F+ KA L  +   IL  +Y+  L+VE  P
Sbjct: 201 GRQKKLREVGRVATICFLCFLARCIMMCFDAFDKKADLDVLDHPILNFIYY--LIVEILP 258

Query: 465 HSLVLIVLRNV 497
            SLVL +LR +
Sbjct: 259 SSLVLFILRRI 269


>11_08_0081 -
           28216179-28216381,28216590-28216657,28217131-28217298,
           28217370-28217436,28217509-28217576,28218256-28218420,
           28218490-28218556,28218629-28218696,28219855-28219992,
           28220189-28220353,28221227-28221304,28221380-28221532,
           28222753-28222823,28223077-28223203,28223306-28223565,
           28223679-28223842,28224287-28224450,28225873-28226159
          Length = 826

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +1

Query: 55  SPPQIDSH---YSRAADAHSHDHEQEQKEEPTQGPYED 159
           SPP   SH   YSR+   H HDH + +   P  G  +D
Sbjct: 556 SPPG-QSHSRSYSRSHSLHLHDHARTRSCSPAPGRQDD 592


>05_04_0073 + 17669311-17671635
          Length = 774

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 52  KSPPQIDSHYSRAADAHSHDHEQEQKEEPTQGP 150
           + PP +D+  S A  AH  + ++E    PT  P
Sbjct: 639 RQPPHMDTRLSHAESAHPDELDEEFDTFPTSRP 671


>05_01_0002 - 8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,
            9802-9902,10016-10651,10820-10899,11014-11673,
            11787-12041,12154-12281,12515-12669,12735-12919,
            13020-13049,13164-13239,13371-13504,13703-13994,
            14400-14567,14647-14745,14843-15014,15103-15281
          Length = 1352

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 70   DSHYSRAADAHSHDHEQEQKEEPTQGPYEDDDGMVGDDPAAYLSNE 207
            DS  +  A   +   E    EE ++  +ED+D M  DDP A   +E
Sbjct: 974  DSENASEAGEDASGSESGDGEECSREDHEDEDDMDQDDPDAKAESE 1019


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,233,170
Number of Sequences: 37544
Number of extensions: 208726
Number of successful extensions: 793
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)