Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_G22
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    32   0.050
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    29   0.46 
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    27   1.9  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    26   4.3  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    26   4.3  
SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos...    25   5.7  
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    25   5.7  
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   5.7  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   7.5  

>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 32.3 bits (70), Expect = 0.050
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
 Frame = -1

Query: 487 IQFASTYHSIPFRMKHPMYIYIYIQAVLELRQFF*-FTS*GNPFVPRLQRAGGSILSSVS 311
           I F S  +S+P   K   Y+Y ++ A++ +  FF   T       P +  +      +V+
Sbjct: 153 ILFLSKLNSVPLNKKIS-YLYTFLLAIVSVLGFFTRITFLAFVIAPYIYFSVRCFKKNVN 211

Query: 310 RVWDIPTFLHVCVFVFIEMFISITAILNE 224
              DI  FLH+C+FV +     +  IL +
Sbjct: 212 NPKDI--FLHLCIFVSVSFATVLACILED 238


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 471 LIIVFHFE*NTLCIYIYTYKQSLSYVSSFDLRLRGIPLSRVYSER-GVPFLA 319
           +++  H E   +C  I T+   L   S +D ++ G+PL +VY+   G+P  A
Sbjct: 36  IVVKHHEEFLKVCDIISTFTYQLD-ASIYDEKVEGVPLKQVYANSIGLPVYA 86


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 259 EMFISITAILNETIIMN*RRKQENIYLIIIKHSLRNK 149
           + F S  A  N T + N +RKQ N   ++IKH L+ K
Sbjct: 660 DKFSSKKAGFNPTSLSN-KRKQRNKNFMMIKHKLKGK 695


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = -1

Query: 487 IQFASTYHSIPFRMKHPMYIYIYIQAVLELRQFF*FTS*GNPFVPRLQRAGGSILSSVSR 308
           I+FAST+H IPF+    +Y+ + I  V+ L  ++ +   G P    +   G  +L +  +
Sbjct: 82  IRFASTFHRIPFQF---LYLAV-IATVIILASYYGYFD-GVPAWRSVHHYGEDVLLNYIK 136

Query: 307 VWDI 296
             DI
Sbjct: 137 GCDI 140


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 200 SSLIHYYCLV*YGSNRN 250
           SS  H YC + YGSN N
Sbjct: 165 SSYFHPYCWIDYGSNNN 181


>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 502 STTHYIQFASTYHSIPFRMKHPMYIYI 422
           S TH +Q   T   + F +KHP+Y ++
Sbjct: 101 SLTHVLQQIYTTLYVEFVVKHPLYTHV 127


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -1

Query: 178 IIIKHSLRNKYCFIYPRTKHFKLK 107
           ++I H+LR +YCF++  +   +L+
Sbjct: 301 LVIGHTLRAEYCFMFDESDILQLR 324


>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 48  CYIYMQFLYHGFSIQSAFMYFNLKCLVL 131
           C + +++ + GFS    F+YF L  ++L
Sbjct: 45  CVVDVKYYFEGFSHSLLFVYFFLTLIIL 72


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 29  SWNGNLMLYIHAVLIPRFQHSICFHV 106
           SW  N  L+ +A +I  F H +  HV
Sbjct: 328 SWRDNASLFNYAAIIISFNHQMIPHV 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,389,037
Number of Sequences: 5004
Number of extensions: 48918
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)