Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_G22
         (559 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1234 - 10007446-10007940,10008030-10008125,10008980-100092...    29   3.3  
12_01_0926 + 9178804-9180324,9180612-9181157                           27   7.7  
08_02_1475 - 27369088-27369199,27369404-27369651,27369734-273699...    27   7.7  

>01_01_1234 -
           10007446-10007940,10008030-10008125,10008980-10009253,
           10009381-10009682,10010078-10010123,10010319-10010368,
           10011124-10011268,10012051-10012229,10012327-10012485,
           10012636-10012887,10012972-10013097,10013197-10013525,
           10014183-10014252
          Length = 840

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 410 CLYVYIYIHRVFHSKWNTMISACELNVMRC 499
           C   Y +I  VF S W  ++ AC ++ M C
Sbjct: 429 CCCCYGHIQFVFFSSWFVVVMACTMSSMAC 458


>12_01_0926 + 9178804-9180324,9180612-9181157
          Length = 688

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 431 IHRVFHSKWNTMISACELNVMRCRV 505
           +HR+ H  WN ++ AC L +M CR+
Sbjct: 314 LHRIDHEAWNDIV-ACSLQLM-CRL 336


>08_02_1475 -
           27369088-27369199,27369404-27369651,27369734-27369900,
           27370386-27370621,27371340-27371620
          Length = 347

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -1

Query: 337 GGSILSSVSRVWD--IPTFLHVCVFVF-IEMFIS 245
           GGS      R W   +PT L  C+ VF +EMF++
Sbjct: 22  GGSYYDEERRWWPWLVPTVLVACIVVFLVEMFVN 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,119,384
Number of Sequences: 37544
Number of extensions: 263454
Number of successful extensions: 434
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)