Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_G20
         (250 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    25   1.5  
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha...    23   5.9  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    23   7.8  

>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 63  DIKFDRSNLDYTMNIMLVDF 122
           DIK D   LD  +N+ ++DF
Sbjct: 364 DIKLDNIMLDENLNVKIIDF 383


>SPBC14F5.12c |cbh2||centromere binding protein
           Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 180 VYPTCTQEAAYAYAGYLR 233
           +Y  C QE  YA+  Y R
Sbjct: 320 IYHPCGQEIVYAFKSYYR 337


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 180 VYPTCTQEAAYA 215
           + PTCTQE  Y+
Sbjct: 344 ILPTCTQETVYS 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 893,459
Number of Sequences: 5004
Number of extensions: 13168
Number of successful extensions: 33
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)