Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_G18
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...   151   6e-38
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...   143   1e-35
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    27   2.1  
SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe...    26   2.8  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   2.8  
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    25   4.9  
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    25   4.9  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   4.9  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    25   8.6  

>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score =  151 bits (366), Expect = 6e-38
 Identities = 66/97 (68%), Positives = 79/97 (81%)
 Frame = +2

Query: 113 VTDQTHHIVVPSYSAWFDYNSIHMIEKRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLN 292
           + +QT+ I+VPSY+ WFD + IH IE+R+ PEFFNGK+  KTP IY  YR+FMI++YRL 
Sbjct: 11  LVEQTYPIIVPSYAGWFDMSKIHDIERRSNPEFFNGKSPLKTPSIYKDYRDFMINSYRLE 70

Query: 293 PTEYLTSTASRRNLAGDVCAIMRVHGFLEQWGLINYQ 403
           P EYLT TA RRNL GDVCAI+RVH FLEQWGLINYQ
Sbjct: 71  PNEYLTVTACRRNLVGDVCAIIRVHAFLEQWGLINYQ 107



 Score = 28.3 bits (60), Expect = 0.70
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 402 KLEAESRPTAMGPPPTSHFHVLSDTPSGLQPLIAR 506
           +++ E+RP    PP + H   +S+TP   Q ++A+
Sbjct: 107 QIDPETRPAFRLPPISGHVQAISNTPIVTQEMLAQ 141


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score =  143 bits (347), Expect = 1e-35
 Identities = 63/113 (55%), Positives = 81/113 (71%)
 Frame = +2

Query: 62  SDSNTQEMLTKEELEDNVTDQTHHIVVPSYSAWFDYNSIHMIEKRALPEFFNGKNKSKTP 241
           S     E   ++E ++ +  Q   + VP ++ WFD++ +H IEK+  PEFF+GKN SKTP
Sbjct: 28  SKKEDTEPEVRDEAKEFLLSQLPQVEVPEWAQWFDFSKVHEIEKKQNPEFFDGKNTSKTP 87

Query: 242 EIYLAYRNFMIDTYRLNPTEYLTSTASRRNLAGDVCAIMRVHGFLEQWGLINY 400
           E+Y  YR+FMI T+RLN   YLT TA RRNLAGDVCA++RVH FLEQWGLINY
Sbjct: 88  EVYKEYRDFMISTFRLNSKVYLTFTACRRNLAGDVCAVLRVHRFLEQWGLINY 140



 Score = 46.0 bits (104), Expect = 3e-06
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = +3

Query: 414 ESRPTAMGPPPTSHFHVLSDTPSGLQPLI 500
           ++RP+ +GPP TSHF +L+DTP GL PL+
Sbjct: 145 DTRPSKIGPPSTSHFQILADTPRGLVPLL 173


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 287 LNPTEYLTSTASRRNLAGDVCAIMRVHGFLEQW 385
           L+PT Y  S+ +  +  G   AI RV+GF+E W
Sbjct: 197 LSPTTYEVSSLAYSS-DGGFLAIARVNGFVEIW 228


>SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 370 LPRTVGPH*LPSWRRNLVRQRWVHPPPLTST 462
           LP+    H  P WR +L+    +H P L +T
Sbjct: 101 LPKHARYHNAPKWRSSLMDSEILHNPSLANT 131


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 17/69 (24%), Positives = 28/69 (40%)
 Frame = +1

Query: 277 HVPVEPDRVLDEYGVQAQPRRRCLRHNACPRLPRTVGPH*LPSWRRNLVRQRWVHPPPLT 456
           H+ V+P  + D +   +        +++ P LP    P  +PS R    RQ+  HP P  
Sbjct: 193 HMGVDPSTMADAHNAHSSLTPPQSGYSSMPSLPYLQQPFQIPSQR--FSRQQQSHPFPAA 250

Query: 457 STCCRTHPR 483
                  P+
Sbjct: 251 QHAVNGQPQ 259


>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -1

Query: 190 LYHMYRVIIEPGRIRRHHDVVG--LVCHIVFQLFLG 89
           +Y +  VI+E  R++ H  V+G  ++  I+   FLG
Sbjct: 392 IYRLQSVIVEIERMKHHVLVIGHRVITRIIIAYFLG 427


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 187 YHMYRVIIEPGRIRRHHDVVGLVCHIVFQLFLGEHFLRI 71
           +  YR  I+P    +   + G V  I   LFLG++  RI
Sbjct: 79  FQAYRTGIQPISFEQEPQLAGTVFSICCLLFLGDNLSRI 117


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 16/54 (29%), Positives = 21/54 (38%)
 Frame = +3

Query: 321 PGATSPAMSAP*CVSTASSNSGASLTTKLEAESRPTAMGPPPTSHFHVLSDTPS 482
           P  +SPA SA    S  + + G      L        +  PP SH     +TPS
Sbjct: 336 PPLSSPASSASPSESLRNESLGIKSAKSLGLNKDDAPVEGPPVSHLEKDVETPS 389


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
 Frame = +1

Query: 106 RQCDRPD--PPHRGAVLFGLVRL*LYTYDRETRPT*VLQREE*I*NSRNIFS--LQKLHD 273
           RQ D P+   P +    +GL+R   Y Y+ ETR   V +    I  S   F+  + + +D
Sbjct: 600 RQWDYPNGWSPQQILAWYGLIR---YGYEEETRRL-VYRWLYTITKSFVDFNGIVVEKYD 655

Query: 274 RHVPVEPDRVLDEYGVQ 324
              PV+P RV  EYG Q
Sbjct: 656 LTRPVDPHRVEAEYGNQ 672


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,147,145
Number of Sequences: 5004
Number of extensions: 44813
Number of successful extensions: 149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)